CF836262
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836262 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 348.977 bits (894), Expect = 1.417e-95 Identity = 160/182 (87.91%), Postives = 168/182 (92.31%), Query Frame = -3 Query: 147 DPLGLGSDPETLRWNVQSEIVPCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTPPLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGPGPIDNFIAPLADPGHAPVFAAFPPK 692 DPLGL SDPE+LRWN Q+E+V CRWAMLGAAGIFIPELLTK+GILNTPSWYTAGE EYFTDT LFIVE++ IGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVMGAWFQHIYTG GPIDN A LADPGHA +FAAF PK Sbjct: 89 DPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFSPK 270
BLAST of CF836262 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 344.354 bits (882), Expect = 3.490e-94 Identity = 155/182 (85.16%), Postives = 167/182 (91.76%), Query Frame = -3 Query: 147 DPLGLGSDPETLRWNVQSEIVPCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTPPLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGPGPIDNFIAPLADPGHAPVFAAFPPK 692 DPLGLGSDPE+L+WN Q+E+V RWAMLGAAGIFIPE LTK+G+LNTPSWYTAGE EYFTDT LF++E++ IGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVMGAWFQHIYTG GPIDN A LADPGHA +FAAF PK Sbjct: 89 DPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFSPK 270
BLAST of CF836262 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 5.111e-45 Identity = 89/172 (51.74%), Postives = 110/172 (63.95%), Query Frame = -3 Query: 177 DPLGLGSDPETLRWNVQSEIVPCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTPPLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGPGPIDNFIAPLADPGH 692 DPLGL DPE LRW VQ+E+V RWAMLG AG+ +PE+ T +GI+N P WY AG+ EYF + LF++E I + E RRW DI PG VN DPIF L +VGYPGG+ F+PL + E + KEI NGRLAMLA +G QH TG GP DN + ++DP H Sbjct: 77 DPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGI-FNPLNFA-----PTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWH 242
BLAST of CF836262 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 5.111e-45 Identity = 88/179 (49.16%), Postives = 114/179 (63.69%), Query Frame = -3 Query: 156 DPLGLGSDPETLRWNVQSEIVPCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTPPLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGPGPIDNFIAPLADPGHAPVFAAF 692 DPLGL DPE L+W VQ+E+V RWAMLG AG+ +PE+ TK+GI+N P WY AG+ +YF + LF++E I + E RRW DI PG VN DPIF L +VGYPGG+ F+PL + +E + KE+ NGRLAMLA +G QH TG GP +N + L+DP H + F Sbjct: 78 DPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGI-FNPLNFA-----PTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTF 250
BLAST of CF836262 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 9.042e-34 Identity = 83/173 (47.98%), Postives = 103/173 (59.54%), Query Frame = -3 Query: 177 DPLGLGSDPETLRWNVQSEIVPCRWAMLGAAGIFIPELLTKLGILNTPSWY-TAGELEYFTDTPPLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGPGPIDNFIAPLADPGH 692 DPL L DPE LRW VQ+++V RWAMLG AG+ IPE+LTK G++N P W G+ YF + V M + E RRW DI PG VN DPIF + L + GYPG + F+PL + +P + KE KE+ NGRLAMLA +G QH G GP +N LADP H Sbjct: 57 DPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVHMSST-YVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGRV-FNPLNF---APLENKE---KELANGRLAMLAFLGFLVQHNVHGKGPFENLQQHLADPWH 221
BLAST of CF836262 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.765e-29 Identity = 80/187 (42.78%), Postives = 106/187 (56.68%), Query Frame = -3 Query: 183 DPLGLGSDPETL------RWNVQSEIVPCRWAMLGAAGIFIPELLTKLGIL---NTPSWYT------AGELEYFTDTPPLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGPGPIDNFIAPLADP 692 DPLGL SDPE +W E++ R+AMLGAAG PE+L K G++ +W+ AG Y+ D LF++EM +G+AE RR+ D KPG + K G D YPGG F+PLG+G + +KEL+ KEIKNGRLAMLA++G + Q + TG GP N + LADP Sbjct: 77 DPLGL-SDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDE-KSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADP 261
BLAST of CF836262 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.951e-28 Identity = 77/187 (41.18%), Postives = 106/187 (56.68%), Query Frame = -3 Query: 183 DPLGLGSDPETL------RWNVQSEIVPCRWAMLGAAGIFIPELLTKLGIL---NTPSWYT------AGELEYFTDTPPLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGPGPIDNFIAPLADP 692 DPLGL SDPE RW E++ R+AMLGA G PE L K+G++ +W+ AG Y+ D LF++EM +G+AE RR+ D KPG + K G + YPGG +F+PLG+G + +KEL+ KE+KNGRLAMLA++G + Q + TG GP N + +ADP Sbjct: 79 DPLGL-SDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDE-KSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADP 263
BLAST of CF836262 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.232e-24 Identity = 70/177 (39.55%), Postives = 90/177 (50.85%), Query Frame = -3 Query: 183 DPLGLGSDPETLRWNVQSEIVPCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEY------FTDTPPLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGPGPIDNFIAPLADP 692 D GL +DPET N + E++ CRWAMLGA G PELL + G+ W+ AG + + P L + I WA ++ G + + TD YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG GP+DN + LADP Sbjct: 82 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA-----CQVVLMGAIEGYRVAGGPLGEVTDPLYPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADP 251
BLAST of CF836262 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.915e-24 Identity = 71/177 (40.11%), Postives = 91/177 (51.41%), Query Frame = -3 Query: 183 DPLGLGSDPETLRWNVQSEIVPCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEY------FTDTPPLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGPGPIDNFIAPLADP 692 D GL +DPET N + E++ CRWAMLGA G PE+L+K G+ W+ AG + + P L + I WA A ++ G V + G D YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG GPI+N +ADP Sbjct: 80 DTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWA-----AQVVLMGFVEGYRVGGGPLGEGLDKIYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADP 249
BLAST of CF836262 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 3.808e-24 Identity = 71/177 (40.11%), Postives = 91/177 (51.41%), Query Frame = -3 Query: 183 DPLGLGSDPETLRWNVQSEIVPCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEY------FTDTPPLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGPGPIDNFIAPLADP 692 D GL +DPET N + E++ CRWAMLGA G PE+L+K G+ W+ AG + + P L + I WA +I+ V P+ G D YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG GPI+N +ADP Sbjct: 80 DTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGE-----GLDKIYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 249 The following BLAST results are available for this feature:
BLAST of CF836262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 72
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836262 ID=CF836262; Name=CF836262; organism=Citrus sinensis; type=EST; length=694bpback to top |