CF836262

Overview
NameCF836262
Unique NameCF836262
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836262 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 348.977 bits (894), Expect = 1.417e-95
Identity = 160/182 (87.91%), Postives = 168/182 (92.31%), Query Frame = -3
Query:  147 DPLGLGSDPETLRWNVQSEIVPCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTPPLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGPGPIDNFIAPLADPGHAPVFAAFPPK 692
            DPLGL SDPE+LRWN Q+E+V CRWAMLGAAGIFIPELLTK+GILNTPSWYTAGE EYFTDT  LFIVE++ IGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVMGAWFQHIYTG GPIDN  A LADPGHA +FAAF PK
Sbjct:   89 DPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFSPK 270          
BLAST of CF836262 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 3.490e-94
Identity = 155/182 (85.16%), Postives = 167/182 (91.76%), Query Frame = -3
Query:  147 DPLGLGSDPETLRWNVQSEIVPCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTPPLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGPGPIDNFIAPLADPGHAPVFAAFPPK 692
            DPLGLGSDPE+L+WN Q+E+V  RWAMLGAAGIFIPE LTK+G+LNTPSWYTAGE EYFTDT  LF++E++ IGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVMGAWFQHIYTG GPIDN  A LADPGHA +FAAF PK
Sbjct:   89 DPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFSPK 270          
BLAST of CF836262 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.111e-45
Identity = 89/172 (51.74%), Postives = 110/172 (63.95%), Query Frame = -3
Query:  177 DPLGLGSDPETLRWNVQSEIVPCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTPPLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGPGPIDNFIAPLADPGH 692
            DPLGL  DPE LRW VQ+E+V  RWAMLG AG+ +PE+ T +GI+N P WY AG+ EYF  +  LF++E I   + E RRW DI  PG VN DPIF    L   +VGYPGG+ F+PL +         E + KEI NGRLAMLA +G   QH  TG GP DN +  ++DP H
Sbjct:   77 DPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGI-FNPLNFA-----PTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWH 242          
BLAST of CF836262 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.111e-45
Identity = 88/179 (49.16%), Postives = 114/179 (63.69%), Query Frame = -3
Query:  156 DPLGLGSDPETLRWNVQSEIVPCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTPPLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGPGPIDNFIAPLADPGHAPVFAAF 692
            DPLGL  DPE L+W VQ+E+V  RWAMLG AG+ +PE+ TK+GI+N P WY AG+ +YF  +  LF++E I   + E RRW DI  PG VN DPIF    L   +VGYPGG+ F+PL +        +E + KE+ NGRLAMLA +G   QH  TG GP +N +  L+DP H  +   F
Sbjct:   78 DPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGI-FNPLNFA-----PTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTF 250          
BLAST of CF836262 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.042e-34
Identity = 83/173 (47.98%), Postives = 103/173 (59.54%), Query Frame = -3
Query:  177 DPLGLGSDPETLRWNVQSEIVPCRWAMLGAAGIFIPELLTKLGILNTPSWY-TAGELEYFTDTPPLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGPGPIDNFIAPLADPGH 692
            DPL L  DPE LRW VQ+++V  RWAMLG AG+ IPE+LTK G++N P W    G+  YF  +     V M    + E RRW DI  PG VN DPIF +  L   + GYPG + F+PL +   +P + KE   KE+ NGRLAMLA +G   QH   G GP +N    LADP H
Sbjct:   57 DPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVHMSST-YVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGRV-FNPLNF---APLENKE---KELANGRLAMLAFLGFLVQHNVHGKGPFENLQQHLADPWH 221          
BLAST of CF836262 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.765e-29
Identity = 80/187 (42.78%), Postives = 106/187 (56.68%), Query Frame = -3
Query:  183 DPLGLGSDPETL------RWNVQSEIVPCRWAMLGAAGIFIPELLTKLGIL---NTPSWYT------AGELEYFTDTPPLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGPGPIDNFIAPLADP 692
            DPLGL SDPE        +W    E++  R+AMLGAAG   PE+L K G++      +W+       AG   Y+ D   LF++EM  +G+AE RR+ D  KPG +         K  G   D  YPGG  F+PLG+G    + +KEL+ KEIKNGRLAMLA++G + Q + TG GP  N +  LADP
Sbjct:   77 DPLGL-SDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDE-KSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADP 261          
BLAST of CF836262 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.951e-28
Identity = 77/187 (41.18%), Postives = 106/187 (56.68%), Query Frame = -3
Query:  183 DPLGLGSDPETL------RWNVQSEIVPCRWAMLGAAGIFIPELLTKLGIL---NTPSWYT------AGELEYFTDTPPLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGPGPIDNFIAPLADP 692
            DPLGL SDPE        RW    E++  R+AMLGA G   PE L K+G++      +W+       AG   Y+ D   LF++EM  +G+AE RR+ D  KPG +         K  G   +  YPGG +F+PLG+G    + +KEL+ KE+KNGRLAMLA++G + Q + TG GP  N +  +ADP
Sbjct:   79 DPLGL-SDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDE-KSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADP 263          
BLAST of CF836262 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.232e-24
Identity = 70/177 (39.55%), Postives = 90/177 (50.85%), Query Frame = -3
Query:  183 DPLGLGSDPETLRWNVQSEIVPCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEY------FTDTPPLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGPGPIDNFIAPLADP 692
            D  GL +DPET   N + E++ CRWAMLGA G   PELL + G+      W+ AG   +      +   P L   + I   WA       ++  G +    +        TD  YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP+DN +  LADP
Sbjct:   82 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA-----CQVVLMGAIEGYRVAGGPLGEVTDPLYPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADP 251          
BLAST of CF836262 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.915e-24
Identity = 71/177 (40.11%), Postives = 91/177 (51.41%), Query Frame = -3
Query:  183 DPLGLGSDPETLRWNVQSEIVPCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEY------FTDTPPLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGPGPIDNFIAPLADP 692
            D  GL +DPET   N + E++ CRWAMLGA G   PE+L+K G+      W+ AG   +      +   P L   + I   WA     A ++  G V    +       G D  YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GPI+N    +ADP
Sbjct:   80 DTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWA-----AQVVLMGFVEGYRVGGGPLGEGLDKIYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADP 249          
BLAST of CF836262 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.808e-24
Identity = 71/177 (40.11%), Postives = 91/177 (51.41%), Query Frame = -3
Query:  183 DPLGLGSDPETLRWNVQSEIVPCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEY------FTDTPPLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGPGPIDNFIAPLADP 692
            D  GL +DPET   N + E++ CRWAMLGA G   PE+L+K G+      W+ AG   +      +   P L   + I   WA       +I+   V   P+       G D  YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GPI+N    +ADP
Sbjct:   80 DTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGE-----GLDKIYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 249          
The following BLAST results are available for this feature:
BLAST of CF836262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB12_SOLLC1.417e-9587.91Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY3.490e-9485.16Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_PEA5.111e-4551.74Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB24_ARATH5.111e-4549.16Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB120_HORVU9.042e-3447.98Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB13_SOLLC1.765e-2942.78Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA1.951e-2841.18Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB27_TOBAC2.232e-2439.55Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB26_PETSP2.915e-2440.11Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB23_TOBAC3.808e-2440.11Chlorophyll a-b binding protein 36, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02K23_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02K23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836262 ID=CF836262; Name=CF836262; organism=Citrus sinensis; type=EST; length=694bp
TCACACAAGCTTTTTGCTACTTAGAATAGAGGCAATTAATACAAGGTTCT
AATCATACAACCTTTTCCCTAAAAAAAACACCAATTCCTTTGATCTCAAG
CTTCCACTTGGCCCAAATTTCTCTCCCTTTGTTCGTCATCATCTCACTTG
GGGGGGAAGGCAGCAAAAACGGGGGCATGACCAGGATCAGCAAGGGGAGC
AATGAAATTGTCAATGGGGCCGGGGCCGGTGTAAATGTGCTGGAACCAAG
CACCCATCACAGCCAACATAGCCAATCTTCCATTCTTGATCTCCTTAGTC
CTCAGCTCCTTTACCTTCTCGGGCGAACCGGATCCCCAGCCAAGGGGGTC
AAACCAAAGCCCACCTGGGTACCCAACATCGGTGCCGGTGAGCTTGTTGT
TGGGGAAAATCGGGTCAGTGTTCACACAGCCTGGCTTTATAATGTCGGCC
CACCGTCTGCCCTCTGCCCAGCCTATGAATATCATCTCAACAATGAACAG
GGGGGGGGTGTCTGTGAAGTACTCTAGCTCCCCAGCTGTGTACCAGGATG
GAGTGTTGAGGATTCCAAGTTTTGTTAACAATTCCGGAATGAAAATTCCT
GCAGCTCCTAACATTGCCCATCTGCAGGGCACAATTTCTGATTGCACGTT
CCATCTCAGCGTCTCAGGATCAGATCCAAGACCAAGAGGATCGA
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