CF836267

Overview
NameCF836267
Unique NameCF836267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length213
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF836267 vs. ExPASy Swiss-Prot
Match: RD22_ARATH (Dehydration-responsive protein RD22 OS=Arabidopsis thaliana GN=RD22 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.947e-13
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = -2 
Query:   51 VPLEGGDGTKAKAAAVSPPDTSARNPKHLAFQVVKVKPGTVLICQFLPGDPIVW 212
            VPLEG +G +AKA AV   +TSA NP HLAF+V+KVKPGTV +C FLP   +VW
Sbjct:  336 VPLEGENGMRAKAVAVCHKNTSAWNPNHLAFKVLKVKPGTVPVCHFLPETHVVW 389
[Close]
BLAST of CF836267 vs. ExPASy Swiss-Prot
Match: BURP3_ORYSJ (BURP domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=BURP3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.944e-12
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = -2 
Query:   51 VPLEGGDGTKAKAAAVSPPDTSARNPKHLAFQVVKVKPGTVLICQFLPGDPIVW 212
            V + G DGT  +A AV   DT+  NPKH+AFQV+KVKPGTV +C FLP D +VW
Sbjct:  372 VSMAGRDGTGVEAVAVCHADTAGWNPKHVAFQVLKVKPGTVPVCHFLPQDHVVW 425
The following BLAST results are available for this feature:
BLAST of CF836267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RD22_ARATH7.947e-1362.96Dehydration-responsive protein RD22 OS=Arabidopsis... [more]
BURP3_ORYSJ3.944e-1259.26BURP domain-containing protein 3 OS=Oryza sativa s... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02L02_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836267 ID=CF836267; Name=CF836267; organism=Citrus sinensis; type=EST; length=213bp
TGGGATAAACAGGATCAACATTTTATTCCCCAGTGCTTCTTATTGGGAAC
CCAAACAATGGGATCCCCAGGAAGGAATTGACATATAAGAACTGTTCCTG
GCTTAACTTTGACCACTTGAAAAGCTAAATGCTTGGGGTTCCTTGCTGAT
GTATCTGGGGGGGAAACTGCTGCTGCTTTGGCTTTTGTCCCATCCCCACC
TTCCAAGGGAACC
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