CF836269

Overview
NameCF836269
Unique NameCF836269
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836269 vs. ExPASy Swiss-Prot
Match: ILL5_ARATH (IAA-amino acid hydrolase ILR1-like 5 OS=Arabidopsis thaliana GN=ILL5 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.403e-42
Identity = 81/134 (60.45%), Postives = 102/134 (76.12%), Query Frame = 3
Query:  132 MSFSKWVFVVFVLHLLNPCPVRFXXXXXXXXXXXDIPKKLLNFAKRQELVGWMIGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYKHSVAVTGVVGFIGTGEPPFVALRADMDSLPLQEMVEWEYKSKIPG 533
            MSF K V  V +LHLLN C +              IPK  L+ AKR++   WM+GIRR+IH+NPELGY+E ETS+L+++ELDKMG+ YK+ VAVTGV+G++GTG  PFVALRADMD+LP+QEMVEWE+KSKIPG
Sbjct:    1 MSFCKLVSFVLILHLLNSCLIS-----CSSNDLSQIPKNFLSLAKREDFFDWMVGIRRRIHENPELGYEEVETSKLVKTELDKMGVSYKNPVAVTGVIGYVGTGHAPFVALRADMDALPIQEMVEWEHKSKIPG 129          
BLAST of CF836269 vs. ExPASy Swiss-Prot
Match: ILL4_ARATH (IAA-amino acid hydrolase ILR1-like 4 OS=Arabidopsis thaliana GN=ILL4 PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 1.832e-42
Identity = 81/134 (60.45%), Postives = 100/134 (74.63%), Query Frame = 3
Query:  132 MSFSKWVFVVFVLHLLNPCPVRFXXXXXXXXXXXDIPKKLLNFAKRQELVGWMIGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYKHSVAVTGVVGFIGTGEPPFVALRADMDSLPLQEMVEWEYKSKIPG 533
            MSF KWV  V +LHLLNP  +              IP K L  AKR +   WM+GIRR+IH+NPELGY+E ETS+L+R+EL+KMG+ YK+ VAVTGVVG++GTG  PFVALRADMD+L +QEMVEWE+KSK+PG
Sbjct:    1 MSFFKWVSFVLILHLLNPTLIS-----CSSNGLSQIPSKFLTLAKRNDFFDWMVGIRRRIHENPELGYEEVETSKLVRAELEKMGVSYKYPVAVTGVVGYVGTGHAPFVALRADMDALAMQEMVEWEHKSKVPG 129          
BLAST of CF836269 vs. ExPASy Swiss-Prot
Match: ILL2_ARATH (IAA-amino acid hydrolase ILR1-like 2 OS=Arabidopsis thaliana GN=ILL2 PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.150e-36
Identity = 71/99 (71.72%), Postives = 86/99 (86.87%), Query Frame = 3
Query:  237 IPKKLLNFAKRQELVGWMIGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYKHSVAVTGVVGFIGTGEPPFVALRADMDSLPLQEMVEWEYKSKIPG 533
            I  KLL FAK  E+  WM+ IRRKIH+NPELGY+E ETS+LIRSEL+ +GIKY++ VA+TGV+G+IGTGEPPFVALRADMD+LP+QE VEWE+KSKI G
Sbjct:   34 IQTKLLEFAKSPEVFDWMVKIRRKIHENPELGYEELETSKLIRSELELIGIKYRYPVAITGVIGYIGTGEPPFVALRADMDALPIQEGVEWEHKSKIAG 132          
BLAST of CF836269 vs. ExPASy Swiss-Prot
Match: ILL1_ORYSJ (IAA-amino acid hydrolase ILR1-like 1 OS=Oryza sativa subsp. japonica GN=ILL1 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.661e-35
Identity = 67/100 (67.00%), Postives = 81/100 (81.00%), Query Frame = 3
Query:  234 DIPKKLLNFAKRQELVGWMIGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYKHSVAVTGVVGFIGTGEPPFVALRADMDSLPLQEMVEWEYKSKIPG 533
            D P  LL  AK  E  GWM+G+RR+IH+NPELGY+EF TS+L+R ELD +GI Y+H  AVTGVV  +GTG PPFVALRADMD+LP+QE VEWE+KSK+PG
Sbjct:   31 DDPAGLLRRAKEAEFAGWMVGLRRRIHENPELGYEEFATSELVRRELDALGIPYRHPFAVTGVVATVGTGGPPFVALRADMDALPMQESVEWEHKSKVPG 130          
BLAST of CF836269 vs. ExPASy Swiss-Prot
Match: ILL1_ORYSI (IAA-amino acid hydrolase ILR1-like 1 OS=Oryza sativa subsp. indica GN=ILL1 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.661e-35
Identity = 67/100 (67.00%), Postives = 81/100 (81.00%), Query Frame = 3
Query:  234 DIPKKLLNFAKRQELVGWMIGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYKHSVAVTGVVGFIGTGEPPFVALRADMDSLPLQEMVEWEYKSKIPG 533
            D P  LL  AK  E  GWM+G+RR+IH+NPELGY+EF TS+L+R ELD +GI Y+H  AVTGVV  +GTG PPFVALRADMD+LP+QE VEWE+KSK+PG
Sbjct:   31 DDPAGLLRRAKEAEFAGWMVGLRRRIHENPELGYEEFATSELVRRELDALGIPYRHPFAVTGVVATVGTGGPPFVALRADMDALPMQESVEWEHKSKVPG 130          
BLAST of CF836269 vs. ExPASy Swiss-Prot
Match: ILL1_ARATH (IAA-amino acid hydrolase ILR1-like 1 OS=Arabidopsis thaliana GN=ILL1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.836e-34
Identity = 67/99 (67.68%), Postives = 82/99 (82.83%), Query Frame = 3
Query:  237 IPKKLLNFAKRQELVGWMIGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYKHSVAVTGVVGFIGTGEPPFVALRADMDSLPLQEMVEWEYKSKIPG 533
            IP   L  AK  E+   M+ IRRKIH+NPELGY+EFETS+ IRSELD +G+KY+  VA+TG++G+IGTGEPPFVALRADMD+LP+QE VEWE+KSK PG
Sbjct:   33 IPINFLELAKSPEVFDSMVRIRRKIHENPELGYEEFETSKFIRSELDLIGVKYRFPVAITGIIGYIGTGEPPFVALRADMDALPIQEAVEWEHKSKNPG 131          
BLAST of CF836269 vs. ExPASy Swiss-Prot
Match: ILR1_ARATH (IAA-amino acid hydrolase ILR1 OS=Arabidopsis thaliana GN=ILR1 PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 4.234e-31
Identity = 69/134 (51.49%), Postives = 87/134 (64.93%), Query Frame = 3
Query:  132 MSFSKWVFVVFVLHLLNPCPVRFXXXXXXXXXXXDIPKKLLNFAKRQELVGWMIGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYKHSVAVTGVVGFIGTGEPPFVALRADMDSLPLQEMVEWEYKSKIPG 533
            M FS   FV+FV     P P+              + + +L+ AK  E   WM GIRRKIH+NPE G+QEF+TSQL+R ELD +G+KYK+ VA TGVV +IG+   P   LRADMD+LPLQE+VEWE KSK+ G
Sbjct:    1 MDFSGSFFVIFVTFFFLP-PLSSAGSYDSGSGLESLARGMLHSAKDPEFFEWMRGIRRKIHENPETGFQEFKTSQLVRDELDSLGVKYKYPVAKTGVVAWIGSCSKPVFGLRADMDALPLQELVEWESKSKVDG 133          
BLAST of CF836269 vs. ExPASy Swiss-Prot
Match: ILL2_ORYSJ (IAA-amino acid hydrolase ILR1-like 2 OS=Oryza sativa subsp. japonica GN=ILL2 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.759e-29
Identity = 56/93 (60.22%), Postives = 74/93 (79.57%), Query Frame = 3
Query:  249 LLNFAKRQELVGWMIGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYKHSVAVTGVVGFIGTGEPPFVALRADMDSLPLQEMVEWEYKSKI 527
            +L+ A+R E   WM G+R  IH+ PEL ++E ETS+L+R+ELD MG+ Y+H VA TGVV  +GTG PPFVALRADMD+LP+QE V+WE+KSK+
Sbjct:   50 VLDRARRPEFAAWMAGVRWAIHERPELAFEEIETSRLVRAELDAMGVAYRHPVAGTGVVATVGTGRPPFVALRADMDALPMQEEVQWEHKSKV 142          
BLAST of CF836269 vs. ExPASy Swiss-Prot
Match: ILL6_ORYSJ (IAA-amino acid hydrolase ILR1-like 6 OS=Oryza sativa subsp. japonica GN=ILL6 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.967e-28
Identity = 57/97 (58.76%), Postives = 73/97 (75.26%), Query Frame = 3
Query:  243 KKLLNFAKRQELVGWMIGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYKHSVAVTGVVGFIGTGEPPFVALRADMDSLPLQEMVEWEYKSKIPG 533
            +++   A R E   W+  +RR+IH+ PEL Y+E ETS+L+R ELD MG+ ++H VA TGVV  IGTG PP VALRADMD+LP+QE VEWE+KSK PG
Sbjct:   97 EEIAGMAGRPETAAWLRAVRRRIHERPELAYEEVETSRLVRDELDAMGVGFRHPVARTGVVANIGTGRPPVVALRADMDALPIQEAVEWEHKSKNPG 193          
BLAST of CF836269 vs. ExPASy Swiss-Prot
Match: ILL6_ARATH (IAA-amino acid hydrolase ILR1-like 6 OS=Arabidopsis thaliana GN=ILL6 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 8.262e-27
Identity = 53/96 (55.21%), Postives = 76/96 (79.17%), Query Frame = 3
Query:  246 KLLNFAKRQELVGWMIGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYKHSVAVTGVVGFIGTGEPPFVALRADMDSLPLQEMVEWEYKSKIPG 533
            ++L    + + V W+  +RR IH+NPEL ++E+ETS+LIRSELD+MGI Y++ +A TG+  +IG+G PPFVA+RADMD+LP+QE VEWE+ SK+ G
Sbjct:   75 EILRLTYQPDNVAWLKRVRRTIHENPELAFEEYETSRLIRSELDRMGIMYRYPLAKTGIRAWIGSGGPPFVAVRADMDALPIQEAVEWEHISKVAG 170          
The following BLAST results are available for this feature:
BLAST of CF836269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
ILL5_ARATH1.403e-4260.45IAA-amino acid hydrolase ILR1-like 5 OS=Arabidopsi... [more]
ILL4_ARATH1.832e-4260.45IAA-amino acid hydrolase ILR1-like 4 OS=Arabidopsi... [more]
ILL2_ARATH1.150e-3671.72IAA-amino acid hydrolase ILR1-like 2 OS=Arabidopsi... [more]
ILL1_ORYSJ1.661e-3567.00IAA-amino acid hydrolase ILR1-like 1 OS=Oryza sati... [more]
ILL1_ORYSI1.661e-3567.00IAA-amino acid hydrolase ILR1-like 1 OS=Oryza sati... [more]
ILL1_ARATH1.836e-3467.68IAA-amino acid hydrolase ILR1-like 1 OS=Arabidopsi... [more]
ILR1_ARATH4.234e-3151.49IAA-amino acid hydrolase ILR1 OS=Arabidopsis thali... [more]
ILL2_ORYSJ6.759e-2960.22IAA-amino acid hydrolase ILR1-like 2 OS=Oryza sati... [more]
ILL6_ORYSJ1.967e-2858.76IAA-amino acid hydrolase ILR1-like 6 OS=Oryza sati... [more]
ILL6_ARATH8.262e-2755.21IAA-amino acid hydrolase ILR1-like 6 OS=Arabidopsi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02L03_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836269 ID=CF836269; Name=CF836269; organism=Citrus sinensis; type=EST; length=535bp
CTAACTTTTTTATTCTCCTTAAATTATTCGAAAAACCTATTTATTAAAGA
AATCAACTTCAACGCATAATAGGGTCTGAAGTTGCTTATTCCTCATTTTG
TTCTTGGAAATCGAAACTTATGGGTGGAGCCATGAGTTTCTCGAAGTGGG
TCTTCGTAGTTTTTGTTCTTCATTTGCTCAATCCATGTCCTGTTAGATTC
TCGTATGGCTCTTCAAGCTCAAATGGGTTATCGGATATTCCAAAAAAGTT
GCTTAATTTTGCAAAAAGACAAGAGCTTGTTGGCTGGATGATTGGTATCA
GGAGAAAAATACATCAGAATCCAGAACTGGGCTATCAGGAATTTGAGACT
AGTCAGCTTATTAGATCAGAATTGGATAAAATGGGTATTAAATACAAACA
CTCGGTAGCAGTAACTGGTGTTGTTGGTTTTATTGGGACTGGTGAGCCTC
CTTTTGTTGCATTGAGAGCAGATATGGATTCTCTTCCTCTGCAGGAAATG
GTCGAGTGGGAGTACAAGAGTAAAATTCCTGGGAA
back to top