CF837821

Overview
NameCF837821
Unique NameCF837821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length302
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF837821 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.206e-12
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 1
Query:    1 HWYIQSTCATSGEGLYEGLDWLSNNIANKA 90
            HWYIQSTCATSGEGLYEGLDWLSNNIANKA
Sbjct:  152 HWYIQSTCATSGEGLYEGLDWLSNNIANKA 181          
BLAST of CF837821 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 5.206e-12
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 1
Query:    1 HWYIQSTCATSGEGLYEGLDWLSNNIANKA 90
            HWYIQSTCATSGEGLYEGLDWLSNNIANKA
Sbjct:  152 HWYIQSTCATSGEGLYEGLDWLSNNIANKA 181          
BLAST of CF837821 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 1.978e-11
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 1
Query:    1 HWYIQSTCATSGEGLYEGLDWLSNNIANKA 90
            HWYIQSTCATSGEGLYEGLDWLSNNIA+KA
Sbjct:  152 HWYIQSTCATSGEGLYEGLDWLSNNIASKA 181          
BLAST of CF837821 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.978e-11
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 1
Query:    1 HWYIQSTCATSGEGLYEGLDWLSNNIANKA 90
            HWYIQSTCATSGEGLYEGLDWLSNNIA+KA
Sbjct:  152 HWYIQSTCATSGEGLYEGLDWLSNNIASKA 181          
BLAST of CF837821 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 2.584e-11
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 1
Query:    1 HWYIQSTCATSGEGLYEGLDWLSNNIANKA 90
            HWYIQSTCATSGEGLYEGLDWLSNNIA KA
Sbjct:  152 HWYIQSTCATSGEGLYEGLDWLSNNIAGKA 181          
BLAST of CF837821 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.584e-11
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 1
Query:    1 HWYIQSTCATSGEGLYEGLDWLSNNIANK 87
            HWYIQSTCATSGEGLYEGLDWLSNN+ANK
Sbjct:  152 HWYIQSTCATSGEGLYEGLDWLSNNLANK 180          
BLAST of CF837821 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 4.407e-11
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 1
Query:    1 HWYIQSTCATSGEGLYEGLDWLSNNIANKA 90
            HWYIQSTCATSGEGLYEGLDWLSNNI++KA
Sbjct:  152 HWYIQSTCATSGEGLYEGLDWLSNNISSKA 181          
BLAST of CF837821 vs. ExPASy Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.407e-11
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 1
Query:    1 HWYIQSTCATSGEGLYEGLDWLSNNIANKA 90
            HWYIQSTCATSGEGLYEGLDWLSNNIA+K+
Sbjct:  152 HWYIQSTCATSGEGLYEGLDWLSNNIASKS 181          
BLAST of CF837821 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 5.756e-11
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 1
Query:    1 HWYIQSTCATSGEGLYEGLDWLSNNIANKA 90
            HWYIQSTCATSGEGLYEGL+WLSNNIA+KA
Sbjct:  152 HWYIQSTCATSGEGLYEGLEWLSNNIASKA 181          
The following BLAST results are available for this feature:
BLAST of CF837821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
ARF2_ORYSJ5.206e-12100.00ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF1_CATRO5.206e-12100.00ADP-ribosylation factor 1 OS=Catharanthus roseus G... [more]
ARF1_ORYSJ1.978e-1196.67ADP-ribosylation factor 1 OS=Oryza sativa subsp. j... [more]
ARF1_ARATH1.978e-1196.67ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]
ARF2_ARATH2.584e-1196.67ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]
ARF1_CHLRE2.584e-1196.55ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]
ARF1_SALBA4.407e-1193.33ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARF1_DAUCA4.407e-1193.33ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1... [more]
ARF_VIGUN5.756e-1193.33ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_05E10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF837821 ID=CF837821; Name=CF837821; organism=Citrus sinensis; type=EST; length=302bp
CACTGGTACATCCAGAGCACATGTGCAACATCTGGGGAAGGACTCTATGA
GGGTCTGGACTGGCTCTCCAACAACATCGCTAACAAGGCTTAATTGATTG
GTCAAGTCTGAGCGACTCTTTGCGGCAGCATCTATGTGAATGATGTTACT
ATGCTTTTGTTTATTTTGTCGGGGATTCTTTTTGGGCTTTACTACCTACG
TTCAGAAGAATGTATTTGTTTGTGTTAGATATTTGATTGGCACCATACTA
TAAAGTTTTCTGCATTGTCATTGTAGAGTTTAAATTAAAAAAAAAAAAAA
AA
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