CF837857

Overview
NameCF837857
Unique NameCF837857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF837857 vs. ExPASy Swiss-Prot
Match: CID2_ARATH (Polyadenylate-binding protein-interacting protein 2 OS=Arabidopsis thaliana GN=CID2 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.480e-16
Identity = 58/164 (35.37%), Postives = 86/164 (52.44%), Query Frame = -3 
Query:  221 STLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDEDGFYDNGGDDEFDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISSPLPANDADALMKNMRVSIS---------PKSSMEAAKYVEKPAKYVNPKCSPRR---IQQPR 676
            STLNPNAP+F P  FR+VEDFSP+WW L+TTS W+ ++WLS + + +     GGDD                      FS +E +F+E + S  S+  +++  +   D  + +K M ++I+          K S  + KY +K  KY+NP  + RR   I QPR
Sbjct:   10 STLNPNAPVFDPVEFREVEDFSPKWWDLVTTSKWFRDFWLSANSENEFL---GGDD----------------------FSVMEEEFEEMIAS--SDGGSMADTVTEADVASYLK-MLLNIAESTKEKIYRSKVSSCSPKYNQK--KYMNPNFNCRRNHHIYQPR 143
The following BLAST results are available for this feature:
BLAST of CF837857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CID2_ARATH7.480e-1635.37Polyadenylate-binding protein-interacting protein ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_05F13_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05F13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF837857 ID=CF837857; Name=CF837857; organism=Citrus sinensis; type=EST; length=750bp
TTTTTTTTTTTTTTTTTGAGAAAATTTCTTGTTTCATTTATCCTAAATTG
TACATCTTTTTTACATTTTTTTTTCCCCAATGATTCTTTGTTTCACTGAA
ATTAAAGACGAGAATGAACAAGGAATTATACAGAGTTAAGAGCCTTGCTC
TATACAGCAACTACAGAAAGCAAAAAACTACAAACTGCAAACAACAGCCA
TTGCACATTTTCCCTCTTCAACGGGGTTGCTGGATGCGGCGGGGGCTGCA
CTTTGGGTTCACATACTTGGCCGGTTTCTCAACATATTTGGCAGCTTCCA
TGGAAGATTTGGGAGATATCGAGACCCTCATATTCTTCATCAGTGCATCT
GCATCATTTGCAGGCAGTGGGGATGAAATGTTTTCCAGTTCACTTTCAAA
CGACATAACAAACTCATCGAATTGAGCTTCTATGCTAGAGAAATTTTCGC
CAGCATCAAGGTCAAACGTATCTGGAAGCAAGTCAGCTACATTGCTGACA
TCAAATTCATCATCTCCACCATTGTCATAAAAGCCATCCTCGTCTTGATG
CTGGCTGAGCCAGTAGTTGTGGTACCATGTGGAGGTCGTGATCAGCTGCC
ACCATTCGGGGGAGAAATCCTCCACTTGGCGAAAAGCAGCCGGAATGAAG
AGTGGGGCATTGGGGTTCAACGTCGACCTTCCTGAAACTAGCGCCATCAA
AGTCCAATTCTCACTTCTGATCTTTGATTTGAGATAAGATATTTTTTCGT
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