CF837958

Overview
NameCF837958
Unique NameCF837958
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF837958 vs. ExPASy Swiss-Prot
Match: TPP2_ARATH (Probable thylakoidal processing peptidase 2, chloroplastic OS=Arabidopsis thaliana GN=TPP2 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.367e-57
Identity = 105/148 (70.95%), Postives = 124/148 (83.78%), Query Frame = -1
Query:  311 DVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSRVSNMLDDPYAMKNAAVPIS 754
            DVGDR++AEKVSYFF++PEVSDIVIF+APPIL E G+S  DVFIKRIVA+ GD VEV  GKLLVN   Q EDF+LEP+ YEM+P+ VPEGYVFVLGDNRN SFDSHNWGPLPI+NI+GRSVFRYWPPS+VS+++      +  AV +S
Sbjct:  220 DVGDRVIAEKVSYFFRKPEVSDIVIFKAPPILVEHGYSCADVFIKRIVASEGDWVEVCDGKLLVNDTVQAEDFVLEPIDYEMEPMFVPEGYVFVLGDNRNKSFDSHNWGPLPIKNIIGRSVFRYWPPSKVSDIIHHEQVSQKRAVDVS 367          
BLAST of CF837958 vs. ExPASy Swiss-Prot
Match: TPP1_ARATH (Thylakoidal processing peptidase 1, chloroplastic OS=Arabidopsis thaliana GN=TPP1 PE=2 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 6.787e-57
Identity = 105/151 (69.54%), Postives = 125/151 (82.78%), Query Frame = -1
Query:  311 DVGDRILAEKVSYFFKRPEVSDIVIFRAPPIL---QEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSRVSNMLDDPYAMKNAAVPIS 754
            D GDR++AEKVSYFF++PEVSDIVIF+APPIL    E G+SS DVFIKRIVA+ GD VEV  GKL VN + Q+EDF+LEP++YEM+P+ VP+GYVFVLGDNRN SFDSHNWGPLPIENIVGRSVFRYWPPS+VS+ +    A+    V +S
Sbjct:  190 DKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRDGKLFVNDIVQEEDFVLEPMSYEMEPMFVPKGYVFVLGDNRNKSFDSHNWGPLPIENIVGRSVFRYWPPSKVSDTIYHDQAITRGPVAVS 340          
BLAST of CF837958 vs. ExPASy Swiss-Prot
Match: PLSP1_ARATH (Chloroplast processing peptidase OS=Arabidopsis thaliana GN=PLSP1 PE=2 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 7.765e-53
Identity = 93/131 (70.99%), Postives = 115/131 (87.79%), Query Frame = -1
Query:  362 DVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSRVS 754
            DVGDR++AEKVSY+F++P  +DIVIF++PP+LQE+G++  DVFIKRIVA  GD VEVH GKL+VNGVA++E FILEP  YEM P+ VPE  VFV+GDNRNNS+DSH WGPLP++NI+GRSVFRYWPP+RVS
Sbjct:  148 DVGDRLVAEKVSYYFRKPCANDIVIFKSPPVLQEVGYTDADVFIKRIVAKEGDLVEVHNGKLMVNGVARNEKFILEPPGYEMTPIRVPENSVFVMGDNRNNSYDSHVWGPLPLKNIIGRSVFRYWPPNRVS 278          
BLAST of CF837958 vs. ExPASy Swiss-Prot
Match: LEP1_SYNY3 (Probable signal peptidase I-1 OS=Synechocystis sp. (strain PCC 6803) GN=lepB1 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.392e-32
Identity = 65/127 (51.18%), Postives = 88/127 (69.29%), Query Frame = -1
Query:  368 GDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSR 748
            GDR++ EKVSY F  P+V DI++F  P +LQ  G+  G  FIKR++A  G  VEV+ G +  +G    E++ILEP  Y +  V VP+G VFV+GDNRNNS DSH WG LP +NI+G ++FR++P SR
Sbjct:   52 GDRLVVEKVSYHFHPPQVGDIIVFHPPELLQVQGYDLGQAFIKRVIALPGQTVEVNNGIVYRDGQPLQEEYILEPPQYNLPAVRVPDGQVFVMGDNRNNSNDSHVWGFLPQQNIIGHALFRFFPASR 178          
BLAST of CF837958 vs. ExPASy Swiss-Prot
Match: LEP_PHOLA (Signal peptidase I OS=Phormidium laminosum GN=lepB PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.584e-29
Identity = 58/137 (42.34%), Postives = 87/137 (63.50%), Query Frame = -1
Query:  344 DVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSRVSNMLDDP 754
            +V DR++ EK+SY F  P   DI++F     L++   S  + FIKR++   G+ V+V GG++L+NG   +E++I  P  Y+  P  VP     VLGDNRNNS+DSH WG +P +NI+GR+V R+WP +R+  +   P
Sbjct:   65 EVNDRLIVEKISYHFNPPRRGDIIVFHPTEALKQQNPSLNEAFIKRVIGLPGETVQVTGGRVLINGQPLEENYIQSPPDYQWGPEKVPADSFLVLGDNRNNSYDSHFWGYVPRQNIIGRAVVRFWPVNRLGELGPPP 201          
BLAST of CF837958 vs. ExPASy Swiss-Prot
Match: LEP2_SYNY3 (Probable signal peptidase I-2 OS=Synechocystis sp. (strain PCC 6803) GN=lepB2 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.971e-28
Identity = 63/135 (46.67%), Postives = 83/135 (61.48%), Query Frame = -1
Query:  347 VGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSRVSNMLDD 751
            + DR++ EK+SY  + PE  +IV+F     L+   F   D FIKRI+   GD V V  G + VNG   DE++I  P AYE  PV VP+    VLGDNRNNS+DSH WG +P E ++GR+  R+WP  RV  + DD
Sbjct:   59 INDRLIIEKISYRLRDPERGEIVVFNPTDALKAKNFH--DAFIKRIIGLPGDEVRVSQGNVYVNGKMLDENYIAAPPAYEYGPVKVPDDQYLVLGDNRNNSYDSHYWGFVPREKLLGRAFVRFWPVPRVGLLTDD 191          
BLAST of CF837958 vs. ExPASy Swiss-Prot
Match: LEP_MYCTU (Probable signal peptidase I OS=Mycobacterium tuberculosis GN=lepB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.096e-14
Identity = 57/174 (32.76%), Postives = 79/174 (45.40%), Query Frame = -1
Query:  368 VGDRILAEKVSYFFKRPEVSDIVIFRAPP---------------------ILQEIGFSSGDV--FIKRIVATAGDCVEVHGGK-LLVNGVAQDEDFI------LEPLAY-----EMDPVVVPEGYVFVLGDNRNNSFDSHNWGPL-----------PIENIVGRSVFRYWPPSR 751
            VGDRI+ +K+SY F  P+  D+++FR PP                      L  IGF   D    +KR++A  G  V+      L VNG    E ++       +P  Y     E  PV VP G V+V+GDNR +S DS    PL           P+ N++G++    WPPSR
Sbjct:  108 VGDRIMVDKLSYRFGSPQPGDVIVFRGPPSWNVGYKSIRSHNVAVRWVQNALSFIGFVPPDENDLVKRVIAVGGQTVQCRSDTGLTVNGRPLKEPYLDPATMMADPSIYPCLGSEFGPVTVPPGRVWVMGDNRTHSADSRAHCPLLCTDDPLPGTVPVANVIGKARLIVWPPSR 281          
BLAST of CF837958 vs. ExPASy Swiss-Prot
Match: LEP_MYCLE (Probable signal peptidase I OS=Mycobacterium leprae GN=lepB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.165e-14
Identity = 54/181 (29.83%), Postives = 80/181 (44.20%), Query Frame = -1
Query:  368 VGDRILAEKVSYFFKRPEVSDIVIFRAPP---------------------ILQEIGFSSGDV--FIKRIVATAGDCVEVHGGK-LLVNG----------VAQDEDFILEP-LAYEMDPVVVPEGYVFVLGDNRNNSFDSH------------------NWGPLPIENIVGRSVFRYWPPSR 751
            VGDRI+ +K++Y F  P+  D+++F+ PP                      L  +GF   D    +KR++A  G  V+      L VNG          V  + D    P L  E  PV VP+G ++V+GDNR +S DS                   N G +P+ N++G++    WPPSR
Sbjct:   96 VGDRIMVDKITYRFSSPQPGDVIVFKGPPSWNTMYKSIRSNNIVLRSVQNALSFVGFVPPDENDLVKRVIAVGGQTVQCRSDTGLTVNGKPLKEPYLRPVTMNADLSFSPCLGSEFGPVTVPQGRLWVMGDNRIHSADSRYHCNSTDVVNGLSCTGDPNSGTVPVSNVIGKARVVVWPPSR 276          
The following BLAST results are available for this feature:
BLAST of CF837958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TPP2_ARATH1.367e-5770.95Probable thylakoidal processing peptidase 2, chlor... [more]
TPP1_ARATH6.787e-5769.54Thylakoidal processing peptidase 1, chloroplastic ... [more]
PLSP1_ARATH7.765e-5370.99Chloroplast processing peptidase OS=Arabidopsis th... [more]
LEP1_SYNY33.392e-3251.18Probable signal peptidase I-1 OS=Synechocystis sp.... [more]
LEP_PHOLA4.584e-2942.34Signal peptidase I OS=Phormidium laminosum GN=lepB... [more]
LEP2_SYNY32.971e-2846.67Probable signal peptidase I-2 OS=Synechocystis sp.... [more]
LEP_MYCTU1.096e-1432.76Probable signal peptidase I OS=Mycobacterium tuber... [more]
LEP_MYCLE4.165e-1429.83Probable signal peptidase I OS=Mycobacterium lepra... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_05I01_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05I01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF837958 ID=CF837958; Name=CF837958; organism=Citrus sinensis; type=EST; length=754bp
TTTTTTTTTTTTTTTTTACAGTCAAATCATTTGAATTTCTTTTTTCTTTT
TCTCCCACTCCCTTGCCAAAGAATATCAGAATAAATGATTCCATAAAAAA
TGGCTGTCATCGGCCATGATTGGGCCGTGCAGAAATATACACACTGATTG
AAGAGACGAACCATTAATTGAAACGATGTCCAGGATATGCATGAACTTGA
CAAGGCAAAATATTGACAGCCGCTCGTTAATGAGCTAAAAGTGAGGAAAA
TAATTTTAAAAATTGTTAAAGTTTCATCCTTTTCCACTGCACCCAGGTAG
AAACATGTCACGAGATTGGCACAGCAGCATTCTTCATTGCATAAGGATCA
TCTAACATGTTGGATACTCTGGACGGAGGCCAATAACGAAACACTGACCT
ACCGACGATGTTCTCAATAGGAAGCGGACCCCAGTTATGAGAATCAAAGC
TGTTATTACGATTGTCTCCCAATACAAAGACATAACCTTCAGGCACAACC
ACTGGGTCCATTTCATAAGCTAGTGGCTCCAGAATGAAATCTTCATCTTG
AGCAACACCATTTACAAGCAGTTTCCCACCATGAACTTCGACACAATCTC
CAGCCGTTGCCACTATCCTTTTTATGAATACATCACCAGAACTGAAACCA
ATTTCCTGCAAGATCGGAGGTGCCCTAAAGATCACTATATCAGATACCTC
AGGCCTTTTGAAAAAGTATGAAACCTTCTCTGCCAAAATCCGGTCACCAA
CATC
back to top