CF838345

Overview
NameCF838345
Unique NameCF838345
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838345 vs. ExPASy Swiss-Prot
Match: RS18_ARATH (40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 3.233e-71
Identity = 135/152 (88.82%), Postives = 138/152 (90.79%), Query Frame = -1
Query:  217 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNPRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 672
            MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRN RGLRHYWGLRVRGQH            VSKKR
Sbjct:    1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152          
BLAST of CF838345 vs. ExPASy Swiss-Prot
Match: RS18_BRABE (40S ribosomal protein S18 OS=Branchiostoma belcheri GN=RPS18 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.657e-57
Identity = 107/152 (70.39%), Postives = 127/152 (83.55%), Query Frame = -1
Query:  217 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNPRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 672
            MSLV  E FQHILRV+NTN+DG++KIMFALTSIKG+GRR +NIVCKKAD+D++KRAGELS  E++ L+ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N+LD KLR+DLERLKKIR  RGLRHYWGLRVRGQH            VSKK+
Sbjct:    1 MSLVIPEKFQHILRVMNTNIDGRRKIMFALTSIKGVGRRYSNIVCKKADIDLSKRAGELSDEEVERLITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVMANSLDNKLREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CF838345 vs. ExPASy Swiss-Prot
Match: RS18_AEQIR (40S ribosomal protein S18 OS=Aequipecten irradians GN=RPS18 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.938e-56
Identity = 101/135 (74.81%), Postives = 122/135 (90.37%), Query Frame = -1
Query:  268 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNPRGLRHYWGLRVRGQH 672
            M+L+  E FQHILRV+NTN+DGK+KIMFA+T+IKG+GRR AN+VCKKADVD+ KRAGELS  E++ ++ +++NPRQ+KIP+WFLNRQKD KDGKYSQV+SNALD KLR+DLERLKKIR  RGLRHYWGLRVRGQH
Sbjct:    1 MALIIPEKFQHILRVMNTNIDGKRKIMFAMTAIKGMGRRYANVVCKKADVDITKRAGELSEDEIERVITIMSNPRQYKIPNWFLNRQKDVKDGKYSQVMSNALDNKLREDLERLKKIRAHRGLRHYWGLRVRGQH 135          
BLAST of CF838345 vs. ExPASy Swiss-Prot
Match: RS18_DANRE (40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.045e-53
Identity = 100/152 (65.79%), Postives = 124/152 (81.58%), Query Frame = -1
Query:  217 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNPRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 672
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+NKRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR  RGLRH+WGLRVRGQH            VSKK+
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQKDIKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CF838345 vs. ExPASy Swiss-Prot
Match: RS18_ICTPU (40S ribosomal protein S18 OS=Ictalurus punctatus GN=rps18 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.971e-53
Identity = 99/152 (65.13%), Postives = 124/152 (81.58%), Query Frame = -1
Query:  217 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNPRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 672
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D++KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR  RGLRH+WGLRVRGQH            VSKK+
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLSKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CF838345 vs. ExPASy Swiss-Prot
Match: RS18_RAT (40S ribosomal protein S18 OS=Rattus norvegicus GN=Rps18 PE=1 SV=3)

HSP 1 Score: 207.608 bits (527), Expect = 5.186e-53
Identity = 99/152 (65.13%), Postives = 123/152 (80.92%), Query Frame = -1
Query:  217 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNPRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 672
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR  RGLRH+WGLRVRGQH            VSKK+
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CF838345 vs. ExPASy Swiss-Prot
Match: RS18_PIG (40S ribosomal protein S18 OS=Sus scrofa GN=RPS18 PE=2 SV=3)

HSP 1 Score: 207.608 bits (527), Expect = 5.186e-53
Identity = 99/152 (65.13%), Postives = 123/152 (80.92%), Query Frame = -1
Query:  217 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNPRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 672
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR  RGLRH+WGLRVRGQH            VSKK+
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CF838345 vs. ExPASy Swiss-Prot
Match: RS18_MOUSE (40S ribosomal protein S18 OS=Mus musculus GN=Rps18 PE=2 SV=3)

HSP 1 Score: 207.608 bits (527), Expect = 5.186e-53
Identity = 99/152 (65.13%), Postives = 123/152 (80.92%), Query Frame = -1
Query:  217 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNPRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 672
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR  RGLRH+WGLRVRGQH            VSKK+
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CF838345 vs. ExPASy Swiss-Prot
Match: RS18_HUMAN (40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3)

HSP 1 Score: 207.608 bits (527), Expect = 5.186e-53
Identity = 99/152 (65.13%), Postives = 123/152 (80.92%), Query Frame = -1
Query:  217 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNPRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 672
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR  RGLRH+WGLRVRGQH            VSKK+
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CF838345 vs. ExPASy Swiss-Prot
Match: RS18_CAPHI (40S ribosomal protein S18 OS=Capra hircus GN=RPS18 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.186e-53
Identity = 99/152 (65.13%), Postives = 123/152 (80.92%), Query Frame = -1
Query:  217 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNPRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 672
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR  RGLRH+WGLRVRGQH            VSKK+
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
The following BLAST results are available for this feature:
BLAST of CF838345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RS18_ARATH3.233e-7188.8240S ribosomal protein S18 OS=Arabidopsis thaliana ... [more]
RS18_BRABE2.657e-5770.3940S ribosomal protein S18 OS=Branchiostoma belcher... [more]
RS18_AEQIR2.938e-5674.8140S ribosomal protein S18 OS=Aequipecten irradians... [more]
RS18_DANRE1.045e-5365.7940S ribosomal protein S18 OS=Danio rerio GN=rps18 ... [more]
RS18_ICTPU3.971e-5365.1340S ribosomal protein S18 OS=Ictalurus punctatus G... [more]
RS18_RAT5.186e-5365.1340S ribosomal protein S18 OS=Rattus norvegicus GN=... [more]
RS18_PIG5.186e-5365.1340S ribosomal protein S18 OS=Sus scrofa GN=RPS18 P... [more]
RS18_MOUSE5.186e-5365.1340S ribosomal protein S18 OS=Mus musculus GN=Rps18... [more]
RS18_HUMAN5.186e-5365.1340S ribosomal protein S18 OS=Homo sapiens GN=RPS18... [more]
RS18_CAPHI5.186e-5365.1340S ribosomal protein S18 OS=Capra hircus GN=RPS18... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06E22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06E22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838345 ID=CF838345; Name=CF838345; organism=Citrus sinensis; type=EST; length=696bp
TTTTTTTTTTTTTTTTTATGGTGCAAAACATCTGAATAAAAATATTACCA
TAGAGAAAATAATAGATAAAAGACAGACAGTTCAAATGCTTAAAACCCAT
CCAAAGAAAAGAAAATAAATCTAATATTGTCTGATGCAAATGTTCAGCAA
TAGCAAGTCCAAACTCTTCCTGAACATGTGTATAGATTGTTCAAAACATT
GATAAAGGACAGCTCAACGCTTCTTGGAGACACCAACAGTCTTTCCACGA
CGGCCGGTGGTCTTGGTGTGTTGTCCACGGACACGAAGACCCCAGTAGTG
CCTGAGACCACGGGGGTTCCTGATCTTCTTCAGACGCTCCAAGTCATCTC
TCAACTTCATGTCCAGTGCATTGGATACAACCTGAGAATACTTTCCATCC
TTGTAATCCTTCTGTCTGTTCAAGAACCAATCAGGGATTTTAAACTGTCG
GGGATTTGCAACAACGACCATGAGATTGTCAAGTTCAGCAGCAGATAGTT
CACCGGCCCTCTTGTTCATGTCAACATCAGCTTTCTTGCAAACGATGTTA
GCCAGTCGCCTTCCAATACCCTTAATTGAAGTAAGAGCAAACATAATCTT
CTGCTTCCCGTCGACGTTAGTGTTCAGCACACGCAAAATGTGCTGAAAAT
CTTCGTTCGCCACCAGAGACATTTTCGATTGTGAGGATTGATGATG
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