CF931521

Overview
NameCF931521
Unique NameCF931521
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length377
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF931521 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.383e-20
Identity = 48/70 (68.57%), Postives = 58/70 (82.86%), Query Frame = 2 
Query:  170 VGSSNGSLLTPFADRPRSLLSDLWTERLADPFRVLEQIPFELERDE-TMALSPARVDWKETPEGHFIMLD 376
            V  +NGSLL PF D P +LL+DLW++R  DPFRVLE IPF +++DE +MA+SPARVDWKETPEGH IMLD
Sbjct:   15 VAKANGSLL-PFMDPPITLLADLWSDRFPDPFRVLEHIPFGVDKDEASMAMSPARVDWKETPEGHVIMLD 83
[Close]
BLAST of CF931521 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.207e-18
Identity = 43/69 (62.32%), Postives = 52/69 (75.36%), Query Frame = 2 
Query:  170 VGSSNGSLLTPFADRPRSLLSDLWTERLADPFRVLEQIPFELERDETMALSPARVDWKETPEGHFIMLD 376
            + +S GSL +     P SLLSDLW +R  DPF++LE+IP  LERD ++ALSPARVDWKET EGH IMLD
Sbjct:   19 IKTSEGSLSSALETTPGSLLSDLWLDRFPDPFKILERIPLGLERDTSVALSPARVDWKETAEGHEIMLD 87
[Close]
BLAST of CF931521 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.869e-17
Identity = 41/62 (66.13%), Postives = 50/62 (80.65%), Query Frame = 2 
Query:  194 LTPFADRPRSLLSDLWTERLADPFRVLEQIPFELERDE-TMALSPARVDWKETPEGHFIMLD 376
            L PF D P +LLSDLW++R  DPFRVLEQIP+ +E+ E ++ LS ARVDWKETPEGH IM+D
Sbjct:   30 LLPFIDSPNTLLSDLWSDRFPDPFRVLEQIPYGVEKHEPSITLSHARVDWKETPEGHVIMVD 91
The following BLAST results are available for this feature:
BLAST of CF931521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
HSP41_SOYBN1.383e-2068.5722.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP22_ARATH2.207e-1862.3222.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HSP41_PEA1.869e-1766.1322.7 kDa class IV heat shock protein OS=Pisum sati... [more]
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Properties
Property NameValue
Genbank descriptionEST0598 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P251 similar to class IV small heat shock protein (acc#P30236), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF931521 ID=CF931521; Name=CF931521; organism=Citrus sinensis; type=EST; length=377bp
GTCAATATCTATCTAGCTTCAAGCCTCTCTACCAACAAGCACATTACATA
TAAATAATACATCAAGCACAAAGCCAAAAAGGAAGGAAGAAATGAGGCAG
CAACAACAAACACGGCCCTTTAATGTTAATTTGCTGCCAATGCTGCTATT
GGCAATATTGGCATGTCTTGTGGGCTCATCAAATGGCTCTCTGCTGACGC
CCTTCGCTGATCGTCCGAGGAGTCTGTTATCCGATCTCTGGACGGAACGT
TTGGCAGACCCCTTCCGGGTGCTAGAGCAAATCCCATTTGAGCTCGAGAG
GGACGAGACCATGGCGCTATCTCCCGCTAGAGTGGACTGGAAGGAAACAC
CGGAGGGTCACTTCATAATGCTGGATG
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