CK702303

Overview
NameCK702303
Unique NameCK702303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length332
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK702303 vs. ExPASy Swiss-Prot
Match: MDHC_MEDSA (Malate dehydrogenase, cytoplasmic OS=Medicago sativa GN=CMDH PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.378e-39
Identity = 49/64 (76.56%), Postives = 52/64 (81.25%), Query Frame = 2
Query:    2 LVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG 193
            LV DDAWLNGEFI+TVQQRGAAIIKARK           CDHIRDWVLGTP+GT+VSMGVYSDG
Sbjct:  213 LVSDDAWLNGEFISTVQQRGAAIIKARKLSSALSAASAACDHIRDWVLGTPQGTFVSMGVYSDG 276          

HSP 2 Score: 77.7962 bits (190), Expect = 4.378e-39
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 1
Query:  211 PAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEE 327
            P+GLIYSFPVTC NGEW IVQGLSIDEFSRKKLDLTAEE
Sbjct:  281 PSGLIYSFPVTCANGEWKIVQGLSIDEFSRKKLDLTAEE 319          
BLAST of CK702303 vs. ExPASy Swiss-Prot
Match: MDHC1_ARATH (Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis thaliana GN=At1g04410 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 2.141e-38
Identity = 50/64 (78.12%), Postives = 53/64 (82.81%), Query Frame = 2
Query:    2 LVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG 193
            LVKDDAWL+GEFI+TVQQRGAAIIKARK           CDHIRDWVLGTPEGT+VSMGVYSDG
Sbjct:  213 LVKDDAWLDGEFISTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDG 276          

HSP 2 Score: 74.3294 bits (181), Expect = 2.141e-38
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 1
Query:  211 PAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEE 327
            P+GLIYSFPVTCRNG+W+IVQGL IDE SRKK+DLTAEE
Sbjct:  281 PSGLIYSFPVTCRNGDWSIVQGLPIDEVSRKKMDLTAEE 319          
BLAST of CK702303 vs. ExPASy Swiss-Prot
Match: MDHC2_ARATH (Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis thaliana GN=At5g43330 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.634e-38
Identity = 48/64 (75.00%), Postives = 52/64 (81.25%), Query Frame = 2
Query:    2 LVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG 193
            LVK+D WLNGEFI+TVQQRGAAIIKARK           CDHIRDWV+GTPEGT+VSMGVYSDG
Sbjct:  213 LVKNDEWLNGEFISTVQQRGAAIIKARKLSSALSAASSACDHIRDWVVGTPEGTFVSMGVYSDG 276          

HSP 2 Score: 76.6406 bits (187), Expect = 3.634e-38
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 1
Query:  211 PAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEE 327
            PAGLIYSFPVTCRNGEWTIVQGL ID+ SRKK+DLTAEE
Sbjct:  281 PAGLIYSFPVTCRNGEWTIVQGLPIDDASRKKMDLTAEE 319          
BLAST of CK702303 vs. ExPASy Swiss-Prot
Match: MDHC_MESCR (Malate dehydrogenase, cytoplasmic OS=Mesembryanthemum crystallinum GN=MDH PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.734e-38
Identity = 51/64 (79.69%), Postives = 51/64 (79.69%), Query Frame = 2
Query:    2 LVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG 193
            LV DDAWLNGEFITTVQQRGAAIIKARK           CDHI DWVLGTPEGTWVSMGVYSDG
Sbjct:  213 LVADDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIHDWVLGTPEGTWVSMGVYSDG 276          

HSP 2 Score: 70.0922 bits (170), Expect = 4.734e-38
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 1
Query:  211 PAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEE 327
            PAG+IYSFPVTC+NGEWTIVQGL ID+ SRKK+D TA E
Sbjct:  281 PAGIIYSFPVTCKNGEWTIVQGLPIDDDSRKKMDATAAE 319          
BLAST of CK702303 vs. ExPASy Swiss-Prot
Match: MDHC_BETVU (Malate dehydrogenase, cytoplasmic OS=Beta vulgaris GN=NR1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.116e-37
Identity = 52/64 (81.25%), Postives = 52/64 (81.25%), Query Frame = 2
Query:    2 LVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG 193
            LV DDAWLNGEFITTVQQRGAAIIKARK           CDHIRDWVLGTPEGTWVSMGVYSDG
Sbjct:  213 LVADDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDG 276          

HSP 2 Score: 64.6994 bits (156), Expect = 5.116e-37
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1
Query:  211 PAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEE 327
            PAG+IYSFPVTC++GEW IVQGL IDE SR+K+D T  E
Sbjct:  281 PAGIIYSFPVTCKDGEWKIVQGLPIDEVSRQKMDATGAE 319          
BLAST of CK702303 vs. ExPASy Swiss-Prot
Match: MDHC_MAIZE (Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 6.664e-37
Identity = 50/64 (78.12%), Postives = 51/64 (79.69%), Query Frame = 2
Query:    2 LVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG 193
            LV DD WLNGEFITTVQQRGAAIIKARK           CDHIRDWVLGTPEGT+VSMGVYSDG
Sbjct:  213 LVSDDEWLNGEFITTVQQRGAAIIKARKFSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDG 276          

HSP 2 Score: 69.707 bits (169), Expect = 6.664e-37
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1
Query:  211 PAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEE 327
            P+GLIYSFPVTC  GEW IVQGL IDEFSRKK+D TA+E
Sbjct:  281 PSGLIYSFPVTCSGGEWKIVQGLPIDEFSRKKMDATAQE 319          
BLAST of CK702303 vs. ExPASy Swiss-Prot
Match: MDHC_ORYSJ (Malate dehydrogenase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os10g0478200 PE=1 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 1.919e-36
Identity = 48/64 (75.00%), Postives = 50/64 (78.12%), Query Frame = 2
Query:    2 LVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG 193
            LV DD WLN EFI+TVQQRGAAIIKARK           CDHIRDWVLGTPEGT+VSMGVYSDG
Sbjct:  213 LVADDEWLNTEFISTVQQRGAAIIKARKQSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDG 276          

HSP 2 Score: 73.1738 bits (178), Expect = 1.919e-36
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 1
Query:  211 PAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEE 327
            PAGLIYSFPVTC  GEWTIVQGL IDEFSRKK+D TA+E
Sbjct:  281 PAGLIYSFPVTCSGGEWTIVQGLPIDEFSRKKMDATAQE 319          
BLAST of CK702303 vs. ExPASy Swiss-Prot
Match: MDHC_FELCA (Malate dehydrogenase, cytoplasmic OS=Felis catus GN=MDH1 PE=2 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 3.742e-27
Identity = 40/63 (63.49%), Postives = 46/63 (73.02%), Query Frame = 2
Query:    5 VKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG 193
            +KDD+WL GEFITTVQQRGAA+IKARK           CDH+RD   GTPEG +VSMG+ SDG
Sbjct:  213 LKDDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDG 275          

HSP 2 Score: 55.4546 bits (132), Expect = 3.742e-27
Identity = 23/39 (58.97%), Postives = 33/39 (84.62%), Query Frame = 1
Query:  211 PAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEE 327
            P  L+YSFPVT +N  W +V+GL+I++FSR+K+DLTA+E
Sbjct:  281 PDDLLYSFPVTIKNKTWKVVEGLTINDFSREKMDLTAKE 319          
BLAST of CK702303 vs. ExPASy Swiss-Prot
Match: MDHC_PIG (Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN=MDH1 PE=1 SV=4)

HSP 1 Score: 86.6557 bits (213), Expect = 8.255e-27
Identity = 41/63 (65.08%), Postives = 46/63 (73.02%), Query Frame = 2
Query:    5 VKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG 193
            VKDD+WL GEFITTVQQRGAA+IKARK           CDH+RD   GTPEG +VSMG+ SDG
Sbjct:  213 VKDDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDG 275          

HSP 2 Score: 53.1434 bits (126), Expect = 8.255e-27
Identity = 23/39 (58.97%), Postives = 32/39 (82.05%), Query Frame = 1
Query:  211 PAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEE 327
            P  L+YSFPVT ++  W IV+GL I++FSR+K+DLTA+E
Sbjct:  281 PDDLLYSFPVTIKDKTWKIVEGLPINDFSREKMDLTAKE 319          
BLAST of CK702303 vs. ExPASy Swiss-Prot
Match: MDHC_BOVIN (Malate dehydrogenase, cytoplasmic OS=Bos taurus GN=MDH1 PE=2 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 2.370e-26
Identity = 40/63 (63.49%), Postives = 46/63 (73.02%), Query Frame = 2
Query:    5 VKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG 193
            +KDD+WL GEFITTVQQRGAA+IKARK           CDH+RD   GTPEG +VSMG+ SDG
Sbjct:  213 LKDDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDG 275          

HSP 2 Score: 52.7582 bits (125), Expect = 2.370e-26
Identity = 22/39 (56.41%), Postives = 32/39 (82.05%), Query Frame = 1
Query:  211 PAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEE 327
            P  L+YSFPVT ++  W +V+GL I++FSR+K+DLTA+E
Sbjct:  281 PDDLLYSFPVTIKDKTWKVVEGLPINDFSREKMDLTAKE 319          
The following BLAST results are available for this feature:
BLAST of CK702303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
MDHC_MEDSA4.378e-3976.56Malate dehydrogenase, cytoplasmic OS=Medicago sati... [more]
MDHC1_ARATH2.141e-3878.13Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis... [more]
MDHC2_ARATH3.634e-3875.00Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis... [more]
MDHC_MESCR4.734e-3879.69Malate dehydrogenase, cytoplasmic OS=Mesembryanthe... [more]
MDHC_BETVU5.116e-3781.25Malate dehydrogenase, cytoplasmic OS=Beta vulgaris... [more]
MDHC_MAIZE6.664e-3778.13Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2... [more]
MDHC_ORYSJ1.919e-3675.00Malate dehydrogenase, cytoplasmic OS=Oryza sativa ... [more]
MDHC_FELCA3.742e-2763.49Malate dehydrogenase, cytoplasmic OS=Felis catus G... [more]
MDHC_PIG8.255e-2765.08Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN... [more]
MDHC_BOVIN2.370e-2663.49Malate dehydrogenase, cytoplasmic OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5565 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE50G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK702303 ID=CK702303; Name=CK702303; organism=Citrus sinensis; type=EST; length=332bp
GCTTGTCAAGGATGATGCATGGTTGAATGGAGAATTCATAACCACAGTCC
AACAACGTGGTGCTGCAATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTG
TCTGCTGCTAGCTCTGCTTGTGACCATATCCGTGATTGGGTTCTTGGAAC
TCCTGAGGGCACCTGGGTCTCCATGGGGGTATACTCTGATGGTGTCATAA
CAAATGGTGACCAGCTGGGCTCATTTACTCATTCCCAGTAACCTGCCGCA
ACGGTGAATGGACAATTGTTCAAGGACTCAGCATTGATGAATTCTCAAGG
AAGAAGTTGGACTTGACAGCAGAGGAGCCTCT
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