CK739459

Overview
NameCK739459
Unique NameCK739459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK739459 vs. ExPASy Swiss-Prot
Match: UGPI5_ARATH (Uncharacterized GPI-anchored protein At1g27950 OS=Arabidopsis thaliana GN=At1g27950 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.980e-33
Identity = 66/109 (60.55%), Postives = 83/109 (76.15%), Query Frame = 3 
Query:  120 PDDATNKECSEYLQKTMACLDFARGKITTPSKECCSAVKGIKDDDPKCLCYIIKEANGGEGDMVKNLGVQVPKLLQLPSACQLKNASTSLCPKLLGLSPSSPDAAIFTN 446
            P  A   EC++  QK   CLDFA GK T PSK+CC AV+ IK+ DPKCLC++I++A  G G  +K+LGVQ  KL+QLP++CQL NAS + CPKLLG+SPSSPDAA+FTN
Sbjct:   27 PGGALADECNQDFQKVTLCLDFATGKATIPSKKCCDAVEDIKERDPKCLCFVIQQAKTG-GQALKDLGVQEDKLIQLPTSCQLHNASITNCPKLLGISPSSPDAAVFTN 134
The following BLAST results are available for this feature:
BLAST of CK739459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UGPI5_ARATH7.980e-3360.55Uncharacterized GPI-anchored protein At1g27950 OS=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_5921 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE56G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739459 ID=CK739459; Name=CK739459; organism=Citrus sinensis; type=EST; length=618bp
ATTTATCGCAGCAACAAAGGAAAAAGGAAAGAGGGCAAAAGCGAGAAGAT
GATGGGAATGAAAAAAGGGTTTCTATGTGGCATATTGTTTGGCTTCATAG
CGTTAAGGGTTGTAACCGGCCTGATGACGCTACAAATAAGGAGTGTAGTG
AGTATTTGCAGAAGACGATGGCCTGTTTGGATTTTGCAAGGGGGAAGATT
ACGACTCCGTCCAAAGAATGTTGCAGCGCTGTGAAGGGTATAAAAGACGA
TGATCCAAAGTGTTTGTGTTATATCATCAAGGAGGCTAATGGCGGTGAAG
GCGATATGGTTAAGAACTTGGGCGTGCAGGTGCCTAAGCTGCTTCAGCTT
CCATCCGCTTGCCAGTTGAAAAATGCCAGCACCAGTCTCTGCCCAAAGCT
TCTAGGGCTATCTCCTAGCTCTCCAGATGCTGCAATATTCACAAATACTT
CTTCATCGGCAACTCCAACTACACCAGCGGCCGCGGGAACATCAGCATCT
GACGGATCGTCTGGGAACATGCACGGACCATACCTCCTTGGACCGACGGT
GATCATAGCAATGTCTATCTTTTTCTATGCGTTCCCACTGGGTCTGCTTC
TTTATGTGCTTAACACAG
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