CK739464

Overview
NameCK739464
Unique NameCK739464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length389
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739464 vs. ExPASy Swiss-Prot
Match: DPYD_DANRE (Dihydropyrimidine dehydrogenase [NADP+] OS=Danio rerio GN=dpyd PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.365e-12
Identity = 37/91 (40.66%), Postives = 55/91 (60.44%), Query Frame = 2
Query:   98 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIELISDR 355
            D+S+ + G++ PNPF + S PP T+  +++RAF++GWG  + KT  LD   V NV+PR  R      G+  G I G     + NIELIS++
Sbjct:  532 DISVEMCGIKFPNPFGLASAPPTTSAAMIRRAFEQGWGFALTKTFGLDKDLVTNVSPRIVR------GTTSGHIFGPGQGSFLNIELISEK 616          
BLAST of CK739464 vs. ExPASy Swiss-Prot
Match: DPYD_CAEEL (Dihydropyrimidine dehydrogenase [NADP+] OS=Caenorhabditis elegans GN=dpyd-1 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.365e-12
Identity = 39/100 (39.00%), Postives = 59/100 (59.00%), Query Frame = 2
Query:   92 EPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIELISDRALETMLK 376
            E D+S+ + G++  NPF + S PP T+  + +RAF++GWG ++ KT  LD   V NV+PR  R      GS  G + G     + NIELIS+++ E  L+
Sbjct:  544 EVDISVDMCGVKFENPFGLASAPPTTSGPMCRRAFEQGWGFILTKTYGLDKDLVTNVSPRIVR------GSTSGPLYGPNQGSFMNIELISEKSCEYWLQ 637          
BLAST of CK739464 vs. ExPASy Swiss-Prot
Match: DPYD_CAEBR (Probable dihydropyrimidine dehydrogenase [NADP+] OS=Caenorhabditis briggsae GN=dpyd-1 PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.365e-12
Identity = 39/100 (39.00%), Postives = 59/100 (59.00%), Query Frame = 2
Query:   92 EPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIELISDRALETMLK 376
            E D+S+ + G++  NPF + S PP T+  + +RAF++GWG ++ KT  LD   V NV+PR  R      GS  G + G     + NIELIS+++ E  L+
Sbjct:  554 EVDISVDMCGVKFENPFGLASAPPTTSGPMCRRAFEQGWGFILTKTYGLDKDLVTNVSPRIVR------GSTSGPLYGPNQGSFMNIELISEKSCEYWLQ 647          
BLAST of CK739464 vs. ExPASy Swiss-Prot
Match: DPYD_DICDI (Dihydropyrimidine dehydrogenase [NADP+] OS=Dictyostelium discoideum GN=pyd1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.772e-12
Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = 2
Query:   98 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDR 355
            D+S+ + G++ PNPF + S  P T+  +++R+F++GWG  V KT SLD   V NV+PR  R     +    GQ   + NIELIS++
Sbjct:  530 DISVEMCGMKFPNPFGLASATPATSAAMIRRSFEQGWGFAVTKTFSLDKDLVTNVSPRIVRGTTSGHHFGPGQ-GAFLNIELISEK 614          
BLAST of CK739464 vs. ExPASy Swiss-Prot
Match: DPYD_RAT (Dihydropyrimidine dehydrogenase [NADP+] OS=Rattus norvegicus GN=Dpyd PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.509e-11
Identity = 37/91 (40.66%), Postives = 54/91 (59.34%), Query Frame = 2
Query:   98 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIELISDR 355
            D+S+ + GL+ PNPF + S  P T+  +++RAF+ GWG  + KT SLD   V NV+PR  R      G+  G + G     + NIELIS++
Sbjct:  532 DISVEMAGLRFPNPFGLASATPATSTPMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIIR------GTTSGPLYGPGQSSFLNIELISEK 616          
BLAST of CK739464 vs. ExPASy Swiss-Prot
Match: DPYD_MOUSE (Dihydropyrimidine dehydrogenase [NADP+] OS=Mus musculus GN=Dpyd PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.509e-11
Identity = 37/91 (40.66%), Postives = 54/91 (59.34%), Query Frame = 2
Query:   98 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIELISDR 355
            D+S+ + GL+ PNPF + S  P T+  +++RAF+ GWG  + KT SLD   V NV+PR  R      G+  G + G     + NIELIS++
Sbjct:  532 DISVEMAGLRFPNPFGLASATPATSTPMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIIR------GTTSGPLYGPGQSSFLNIELISEK 616          
BLAST of CK739464 vs. ExPASy Swiss-Prot
Match: DPYD_PONAB (Dihydropyrimidine dehydrogenase [NADP+] OS=Pongo abelii GN=DPYD PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.779e-11
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 2
Query:   77 ASASAEP------------DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIELISDR 355
            AS SA+P            D+S+ + GL+  NPF + S  P T+ ++++RAF+ GWG  + KT SLD   V NV+PR  R      G+  G + G     + NIELIS++
Sbjct:  513 ASVSAKPELPLFYTAIDLVDISVEMAGLKFINPFGLASATPATSTSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVR------GTTSGPMYGPGQSSFLNIELISEK 616          
The following BLAST results are available for this feature:
BLAST of CK739464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
DPYD_DANRE1.365e-1240.66Dihydropyrimidine dehydrogenase [NADP+] OS=Danio r... [more]
DPYD_CAEEL1.365e-1239.00Dihydropyrimidine dehydrogenase [NADP+] OS=Caenorh... [more]
DPYD_CAEBR1.365e-1239.00Probable dihydropyrimidine dehydrogenase [NADP+] O... [more]
DPYD_DICDI6.772e-1240.70Dihydropyrimidine dehydrogenase [NADP+] OS=Dictyos... [more]
DPYD_RAT1.509e-1140.66Dihydropyrimidine dehydrogenase [NADP+] OS=Rattus ... [more]
DPYD_MOUSE1.509e-1140.66Dihydropyrimidine dehydrogenase [NADP+] OS=Mus mus... [more]
DPYD_PONAB9.779e-1137.27Dihydropyrimidine dehydrogenase [NADP+] OS=Pongo a... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_5926 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE56G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739464 ID=CK739464; Name=CK739464; organism=Citrus sinensis; type=EST; length=389bp
CAACACCTCCTTTGCTGTGAATCGTCGGCCAGGATTGCGCTTGCCTAGTC
GAATTGGGTTGAGGGTTTTGGCTTCTGCTTCAGCTTCAGCAGAGCCAGAC
TTGAGTATTACAGTAAATGGACTGCAGATGCCGAACCCGTTTGTTATCGG
ATCGGGTCCACCTGGCACCAACTACACTGTCATGAAGCGAGCCTTTGATG
AAGGCTGGGGTGCTGTTGTTGCTAAAACTGTATCATTAGATGCAGCAAAA
GTTATAAACGTAACTCCTCGATATGCCCGCCTGCGAGCAGGTGCGAATGG
ATCAGCCAAAGGGCAAATTATTGGGTGGGAGAACATAGAACTCATTAGCG
ATCGGGCGCTTGAAACAATGTTGAAAGAATTTAAACAAT
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