CK739467

Overview
NameCK739467
Unique NameCK739467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length511
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739467 vs. ExPASy Swiss-Prot
Match: AGO4B_ORYSJ (Protein argonaute 4B OS=Oryza sativa subsp. japonica GN=AGO4B PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 8.695e-52
Identity = 95/114 (83.33%), Postives = 106/114 (92.98%), Query Frame = 2
Query:    2 RNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFDDLSETSSSQGGMTSAGPVPVPQLPRLQEKVCNSMFFC 343
            RNYDFY+CAHAGMIGT+RPTHYHVL DEIGFS D+LQELVHSLSYVYQRSTTAISVVAPICYAHLAA+QVG+F+KF+D+S+ SSSQGG TS G VPVP+LPRL EKV +SMFFC
Sbjct:  798 RNYDFYMCAHAGMIGTTRPTHYHVLHDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGTFLKFEDMSDASSSQGGHTSVGSVPVPELPRLHEKVRSSMFFC 911          
BLAST of CK739467 vs. ExPASy Swiss-Prot
Match: AGO4A_ORYSJ (Protein argonaute 4A OS=Oryza sativa subsp. japonica GN=AGO4A PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.063e-49
Identity = 92/114 (80.70%), Postives = 103/114 (90.35%), Query Frame = 2
Query:    2 RNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFDDLSETSSSQGGMTSAGPVPVPQLPRLQEKVCNSMFFC 343
            RN DFY+CAHAGMIGT+RPTHYH+L DEIGFS+D+LQELVHSLSYVYQRSTTAISVVAPICYAHLAA+QV  F+KFD++SETSSS GG TSAG  PVP+LPRL  KV +SMFFC
Sbjct:  791 RNNDFYMCAHAGMIGTTRPTHYHILHDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVSQFIKFDEMSETSSSHGGHTSAGSAPVPELPRLHNKVRSSMFFC 904          
BLAST of CK739467 vs. ExPASy Swiss-Prot
Match: AGO16_ORYSJ (Protein argonaute 16 OS=Oryza sativa subsp. japonica GN=AGO16 PE=2 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 7.378e-43
Identity = 82/114 (71.93%), Postives = 95/114 (83.33%), Query Frame = 2
Query:    2 RNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFDDLSETSSSQGGMTSAGPVPVPQLPRLQEKVCNSMFFC 343
            R YDFY+ AHAG IGTSRPTHYHVL DEIGF  D++Q+LV SLSYVYQRSTTAISVVAPICYAHLAA+Q+G FMKF++ +ETSS  GG+ S+    VP+LPRL   VC+SMFFC
Sbjct:  770 RQYDFYMYAHAGPIGTSRPTHYHVLLDEIGFLPDDVQKLVLSLSYVYQRSTTAISVVAPICYAHLAAAQMGQFMKFEEFAETSSGSGGVPSSSGAVVPELPRLHADVCSSMFFC 883          
BLAST of CK739467 vs. ExPASy Swiss-Prot
Match: AGO15_ORYSJ (Protein argonaute 15 OS=Oryza sativa subsp. japonica GN=AGO15 PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 2.221e-39
Identity = 79/114 (69.30%), Postives = 89/114 (78.07%), Query Frame = 2
Query:    2 RNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFDDLSETSSSQGGMTSAGPVPVPQLPRLQEKVCNSMFFC 343
            RN DFY+CAHAGMIGT+RPTHYHVL DE  F+ D+LQELVH+LSYVYQRSTTAIS VAPICYAHLAA+QV  F++ DD +   S  GG   A P PVP+LPRL   V  SMFFC
Sbjct:  779 RNCDFYMCAHAGMIGTTRPTHYHVLHDENNFTPDDLQELVHNLSYVYQRSTTAISGVAPICYAHLAAAQVSQFVRLDDAASEGSGDGG---APPRPVPELPRLHPDVRQSMFFC 889          
BLAST of CK739467 vs. ExPASy Swiss-Prot
Match: MEL1_ORYSJ (Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.384e-25
Identity = 58/115 (50.43%), Postives = 77/115 (66.96%), Query Frame = 2
Query:    8 YDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMK---FDDLSETSSSQGGMTSAGPVPVPQLPRLQEKVCNSMFFC 343
            +DFYLC+HAG+ GTSRPTHYHVL+DE  F++D LQ L ++L Y Y R T A+SVV P  YAHLAA +   +++    D  S   SS   +   GPV V QLP+++E V + MF+C
Sbjct:  944 FDFYLCSHAGIQGTSRPTHYHVLYDENHFTADALQSLTNNLCYTYARCTRAVSVVPPAYYAHLAAFRARYYVEGESSDGGSTPGSSGQAVAREGPVEVRQLPKIKENVKDVMFYC 1058          
BLAST of CK739467 vs. ExPASy Swiss-Prot
Match: PNH1_ORYSJ (Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.497e-24
Identity = 53/112 (47.32%), Postives = 74/112 (66.07%), Query Frame = 2
Query:    8 YDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFDDLSETSSSQGGMTSAGPVPVPQLPRLQEKVCNSMFFC 343
            +DFYLC+HAG+ GTSRP HYHVL+DE  F++DE+Q L ++L Y Y R T ++SVV P  YAHLAA +   +M+  ++SE  ++    T      V  LP ++EKV   MF+C
Sbjct:  869 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYME-PEMSENQTTSKSSTGTNGTSVKPLPAVKEKVKRVMFYC 979          
BLAST of CK739467 vs. ExPASy Swiss-Prot
Match: AGO11_ORYSJ (Protein argonaute 11 OS=Oryza sativa subsp. japonica GN=AGO11 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 5.873e-24
Identity = 54/117 (46.15%), Postives = 75/117 (64.10%), Query Frame = 2
Query:    8 YDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFDDL-----SETSSSQGGMTSAGPVPVPQLPRLQEKVCNSMFFC 343
            +DFYLC+H+G+ GTS PTHY+VLFDE  FS+D LQ L + L Y Y R T ++S+V P+ YAHLAAS+   +++   L     S  S++ G   +   VPV  LP ++E V   MF+C
Sbjct:  776 FDFYLCSHSGIQGTSHPTHYYVLFDENNFSADALQTLTYHLCYTYARCTRSVSIVPPVYYAHLAASRARHYLEEGSLPDHGSSSASAAGGSRRNDRGVPVKPLPEIKENVKQFMFYC 892          
BLAST of CK739467 vs. ExPASy Swiss-Prot
Match: AGO1B_ORYSJ (Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 2.232e-23
Identity = 57/124 (45.97%), Postives = 75/124 (60.48%), Query Frame = 2
Query:    8 YDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFDDLSETSSSQGGMTS------------AGPVPVPQLPRLQEKVCNSMFFC 343
            +DFYLC+HAG+ GTSRP HYHVL+DE  F++DELQ L ++L Y Y R T ++S+V P  YAHLAA +   +M+ +     S + G  TS            AG V V  LP L+E V   MF+C
Sbjct:  995 FDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGAATSRGLPPGVRSARVAGNVAVRPLPALKENVKRVMFYC 1118          
BLAST of CK739467 vs. ExPASy Swiss-Prot
Match: AGO12_ORYSJ (Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 2.915e-23
Identity = 55/112 (49.11%), Postives = 72/112 (64.29%), Query Frame = 2
Query:    8 YDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFDDLSETSSSQGGMTSAGPVPVPQLPRLQEKVCNSMFFC 343
            +DFYLC+H+G+ GTSRPTHYHVL DE GF +D LQ L ++LSY Y R T A+S+V P  YAHL A +   +M+ D+ S+  SS    T       P LP ++E V   MF+C
Sbjct:  940 FDFYLCSHSGIKGTSRPTHYHVLLDENGFKADTLQTLTYNLSYTYARCTRAVSIVPPAYYAHLGAFRARYYME-DEHSDQGSSSSVTTRTDRSTKP-LPEIKENVKRFMFYC 1049          
BLAST of CK739467 vs. ExPASy Swiss-Prot
Match: AGO14_ORYSJ (Protein argonaute 14 OS=Oryza sativa subsp. japonica GN=AGO14 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.807e-23
Identity = 57/116 (49.14%), Postives = 77/116 (66.38%), Query Frame = 2
Query:    8 YDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFDDLSETSS--SQGGMTSAG--PVPVPQLPRLQEKVCNSMFFC 343
            +DFYLC+HAG+ GTSRPTHYHVL DE  FS+D+LQ L ++L Y Y R T ++SVV P  YAHLAA +   + +   +   SS  S G   +AG  P  V +LP+++E V + MF+C
Sbjct:  937 FDFYLCSHAGIQGTSRPTHYHVLHDENRFSADQLQMLTYNLCYTYARCTRSVSVVPPAYYAHLAAFRARYYDEPPAMDGASSVGSGGNQAAAGGQPPAVRRLPQIKENVKDVMFYC 1052          
The following BLAST results are available for this feature:
BLAST of CK739467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
AGO4B_ORYSJ8.695e-5283.33Protein argonaute 4B OS=Oryza sativa subsp. japoni... [more]
AGO4A_ORYSJ1.063e-4980.70Protein argonaute 4A OS=Oryza sativa subsp. japoni... [more]
AGO16_ORYSJ7.378e-4371.93Protein argonaute 16 OS=Oryza sativa subsp. japoni... [more]
AGO15_ORYSJ2.221e-3969.30Protein argonaute 15 OS=Oryza sativa subsp. japoni... [more]
MEL1_ORYSJ2.384e-2550.43Protein argonaute MEL1 OS=Oryza sativa subsp. japo... [more]
PNH1_ORYSJ4.497e-2447.32Protein argonaute PNH1 OS=Oryza sativa subsp. japo... [more]
AGO11_ORYSJ5.873e-2446.15Protein argonaute 11 OS=Oryza sativa subsp. japoni... [more]
AGO1B_ORYSJ2.232e-2345.97Protein argonaute 1B OS=Oryza sativa subsp. japoni... [more]
AGO12_ORYSJ2.915e-2349.11Protein argonaute 12 OS=Oryza sativa subsp. japoni... [more]
AGO14_ORYSJ3.807e-2349.14Protein argonaute 14 OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5929 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE56G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739467 ID=CK739467; Name=CK739467; organism=Citrus sinensis; type=EST; length=511bp
AAGAAACTATGACTTCTACCTTTGTGCCCATGCTGGAATGATTGGTACTT
CAAGGCCAACACATTACCACGTTCTATTTGATGAAATTGGCTTTTCAAGT
GATGAGCTGCAGGAACTAGTGCACTCACTTTCTTATGTGTACCAGAGAAG
CACTACAGCCATTTCTGTAGTTGCTCCAATTTGCTATGCCCACTTGGCAG
CAAGCCAGGTAGGATCATTCATGAAGTTTGACGACTTATCAGAGACATCT
TCTAGCCAGGGTGGGATGACATCTGCTGGACCTGTTCCTGTCCCCCAGCT
GCCTAGACTGCAGGAGAAAGTGTGCAATTCAATGTTCTTCTGTTGAGACA
CTTGTGTGGCTTCTACCGTCAATCAGAATCCTATCAAAGTAGTTTGTATA
TAGTTAGCCTTTTGGTTTTCATCTGGACCATCCAGTGGCAAAGGTGTCTA
GAACTTGTAGTGATGCCTTGAAAATCTCTGCTATTTAATTTTGGGTCTAG
AAACAGAAAGT
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