CK739472

Overview
NameCK739472
Unique NameCK739472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length559
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739472 vs. ExPASy Swiss-Prot
Match: U497B_ARATH (UPF0497 membrane protein At2g37200 OS=Arabidopsis thaliana GN=At2g37200 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 7.713e-58
Identity = 116/180 (64.44%), Postives = 133/180 (73.89%), Query Frame = 1
Query:   28 MFASRPAVHPVEAPPLTEAAGL----RVRMKDVQGMPGTPGGLVLRLLQFVFAAIAVSVMASTSDFHEATAFCYXXXXXXXXXXXXXXXXXXDIYAILVRRSLRNDKVIRLFTVGDGITSTLTYAAACSSAGITVLISNDLNRCGINHCTRFETATAMAFISWFATSPSFLLNFWSLASH 555
            M  SRPA+HPV+A P+   AG      VRMKDVQGMPGT GGL+LRL QFV A I+VSVM +TSDF  ATAFC                   D YA+LVRRSLRN  V++ FT+GDG+TSTLT+AAA +SAGITVLI NDL +C +NHCTRFETATAMAFISWFA SPSF+LNFWSLA+H
Sbjct:    2 MNVSRPAIHPVDALPVAPTAGAIDRPPVRMKDVQGMPGTTGGLILRLSQFVPALISVSVMVTTSDFRSATAFCCLVLAVSLQSLWSLSLFIIDAYALLVRRSLRNHSVVQCFTIGDGVTSTLTFAAASASAGITVLI-NDLGQCNVNHCTRFETATAMAFISWFAVSPSFILNFWSLATH 180          
BLAST of CK739472 vs. ExPASy Swiss-Prot
Match: U4977_ARATH (UPF0497 membrane protein At2g28370 OS=Arabidopsis thaliana GN=At2g28370 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.174e-52
Identity = 106/178 (59.55%), Postives = 125/178 (70.22%), Query Frame = 1
Query:   28 MFASRPAVHPVEAPPL--TEAAGL-RVRMKDVQGMPGTPGGLVLRLLQFVFAAIAVSVMASTSDFHEATAFCYXXXXXXXXXXXXXXXXXXDIYAILVRRSLRNDKVIRLFTVGDGITSTLTYAAACSSAGITVLISNDLNRCGINHCTRFETATAMAFISWFATSPSFLLNFWSLAS 552
            M  S  +VHPVE PP   TE     RVRM D++GMPGT  GL LR  QF+FAA A+ VMASTSDF   TAFCY                  D+YAI+V+RSL+N +++ LF +GDG+TSTLT+AAAC+SAGITVLI NDLN C  NHC +FET+TA+AFISWFA  PSFL NFWSLAS
Sbjct:    1 MNVSHASVHPVEDPPAAATEVENPPRVRMDDMEGMPGTLLGLALRFFQFLFAAAALCVMASTSDFPSVTAFCYLVAATGLQSLWSLALAMVDVYAIMVKRSLQNRRLVSLFAIGDGVTSTLTFAAACASAGITVLIDNDLNSCAQNHCVQFETSTALAFISWFAALPSFLFNFWSLAS 178          
BLAST of CK739472 vs. ExPASy Swiss-Prot
Match: U497L_ARATH (UPF0497 membrane protein At3g53850 OS=Arabidopsis thaliana GN=At3g53850 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.579e-24
Identity = 59/153 (38.56%), Postives = 84/153 (54.90%), Query Frame = 1
Query:  103 MKDVQGMPGTPGGLVLRLLQFVFAAIAVSVMASTSDFHEATAFCYXXXXXXXXXXXXXXXXXXDIYAILVRRSLRNDKVIRLFTVGDGITSTLTYAAACSSAGITVLISNDLNRCGINH---CTRFETATAMAFISWFATSPSFLLNFWSLAS 552
            MK + G PGT  GL+LR+ Q   AA ++ VM S  +F   TAFCY                  D+YA+  ++ L+N  ++ LF VGD +T+ L+ AAACSSAG+ VL   D+  C       C R+E A A++F++W   + S  + FW LAS
Sbjct:    1 MKKLLGGPGTVCGLLLRIGQCASAAASIGVMVSAKEFSVHTAFCYLIASMGLQLLWSFGLACLDVYALRGKKDLQNPILVSLFVVGDWVTAMLSLAAACSSAGVVVLYEKDIKYCNTQSQYPCLRYEVAVALSFVTWIQIAVSSHVTFWILAS 153          
BLAST of CK739472 vs. ExPASy Swiss-Prot
Match: U497J_ARATH (UPF0497 membrane protein At3g23200 OS=Arabidopsis thaliana GN=At3g23200 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.517e-24
Identity = 60/151 (39.74%), Postives = 84/151 (55.63%), Query Frame = 1
Query:  103 MKDVQGMPGTPGGLVLRLLQFVFAAIAVSVMASTSDFHEATAFCYXXXXXXXXXXXXXXXXXXDIYAILVRRSLRNDKVIRLFTVGDGITSTLTYAAACSSAGITVLISNDLNRCGIN-HCTRFETATAMAFISWFATSPSFLLNFWSLAS 552
            M D+ G PGT  GLVLR+ Q VFAA ++S M ++  F   TAFCY                  D +A++ +++L +  ++ LF VGD +TSTL+ A A SSAGITVL   DL  C     C +++ + A+AF+ W   + S L   W LAS
Sbjct:    1 MIDIPGTPGTLTGLVLRISQCVFAAGSISYMVTSGGFFSFTAFCYLIAAMGLQVIWSFGLAILDTFALVRKKTLLSPVLVSLFVVGDWVTSTLSLAGASSSAGITVLYFGDLGSCSFEAECWKYQLSVALAFLCWITIAVSSLTTLWLLAS 151          
BLAST of CK739472 vs. ExPASy Swiss-Prot
Match: U497X_ARATH (UPF0497 membrane protein At5g02060 OS=Arabidopsis thaliana GN=At5g02060 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.723e-23
Identity = 60/151 (39.74%), Postives = 81/151 (53.64%), Query Frame = 1
Query:  103 MKDVQGMPGTPGGLVLRLLQFVFAAIAVSVMASTSDFHEATAFCYXXXXXXXXXXXXXXXXXXDIYAILVRRSLRNDKVIRLFTVGDGITSTLTYAAACSSAGITVLISNDLNRCGIN---HCTRFETATAMAFISWFATSPSFLLNFWSL 546
            MK + G PGT  GL+LRL Q   AA ++ VM S+ DF   TAFC+                  D+YAI  +  LR+  ++ LFTVGD +T+ L  AAACSSAG+TVL + D   C       C RF+ +  ++F +WF  + S    FW L
Sbjct:    1 MKKMIGSPGTMSGLILRLGQCATAAASIGVMVSSYDFSNYTAFCFLVASMGLQLIWSFGLACLDVYAIRRKSDLRSPILLSLFTVGDWVTALLALAAACSSAGVTVLFTKDTEFCRQQPALSCDRFQISVGLSFFNWFLAAISSHTMFWIL 151          
BLAST of CK739472 vs. ExPASy Swiss-Prot
Match: U4974_ARATH (Putative UPF0497 membrane protein At1g49405 OS=Arabidopsis thaliana GN=At1g49405 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.592e-16
Identity = 44/150 (29.33%), Postives = 75/150 (50.00%), Query Frame = 1
Query:  103 MKDVQGMPGTPGGLVLRLLQFVFAAIAVSVMASTSDFHEATAFCYXXXXXXXXXXXXXXXXXXDIYAILVRRSLRNDKVIRLFTVGDGITSTLTYAAACSSAGITVLISNDLNRCGINHCTRFETATAMAFISWFATSPSFLLNFWSLAS 552
            M +V G  GT   L LRL Q V A  ++  M     F++ TAFCY                  DIY +++++  +  +++   ++GD + S L  A+A S+A +  ++ ++ + C    C R++ A  +AF++WF +  S L N W L S
Sbjct:    1 MVEVPGSVGTTASLSLRLGQMVLAFGSLLFMTIGVRFYQFTAFCYLVTIMSLAIPWNLTLAMVDIYCVILQQPFQKPRILLAISIGDWVVSVLALASASSAASVVDILRSNESSCPPTICNRYQFAATLAFLTWFLSLSSSLFNLWLLPS 150          
BLAST of CK739472 vs. ExPASy Swiss-Prot
Match: U497K_ARATH (UPF0497 membrane protein At3g50810 OS=Arabidopsis thaliana GN=At3g50810 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.775e-15
Identity = 47/151 (31.13%), Postives = 74/151 (49.01%), Query Frame = 1
Query:  103 MKDVQGMPGTPGGLVLRLLQFVFAAIAVSVMASTSDFHEATAFCYXXXXXXXXXXXXXXXXXXDIYAILVRRSLRNDKVIRLFTVGDGITSTLTYAAACSSAGITVLISN-DLNRCGINHCTRFETATAMAFISWFATSPSFLLNFWSLAS 552
            M+ V G  GT     LR  Q +F+A ++  M    DF++ T FCY                  D Y++LV+   +  +V+ +   GD + S L+   AC+ A  T L+++ D   C  + C +++ + A+AF+ WF    S L NFWSL S
Sbjct:    1 MEHVPGSFGTSASFALRFGQTIFSAASLIFMCFDFDFYDFTTFCYLAMVMAIVTPWSILLALTDTYSVLVKLLPQELRVLSIVFAGDFVLSFLSLGGACAVASATELLASADGKICDGSLCIQYQVSAALAFLCWFLLLASALFNFWSLPS 151          
BLAST of CK739472 vs. ExPASy Swiss-Prot
Match: U497W_ARATH (UPF0497 membrane protein At4g37235 OS=Arabidopsis thaliana GN=At4g37235 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.417e-11
Identity = 44/144 (30.56%), Postives = 66/144 (45.83%), Query Frame = 1
Query:  127 GTPGGLVLRLLQFVFAAIAVSVMA--STSDFHEATAFCYXXXXXXXXXXXXXXXXXXDIYAILVRRSLRNDKVIRLFTVGDGITSTLTYAAACSSAGITVLISNDLNRCGINHCTRFETATAMAFISWFATSPSFLLNFWSLAS 552
            GT    VLRL Q +F++ ++  M      DF+  T FCY                  + Y+ILV++      VI +   GD + S L+   ACS+A + VL+ +     G   C R++ +  MAF+S F +  S   NF  L S
Sbjct:    9 GTSSSFVLRLGQTLFSSASLLFMCFNDDEDFYAYTTFCYLVTVMGLVTPWSVTLALMEAYSILVKKLPMQATVISVIVAGDFVLSFLSLGGACSTASVAVLLMD----AGEKQCDRYKLSATMAFLSSFLSFASTFFNFCLLPS 148          
The following BLAST results are available for this feature:
BLAST of CK739472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
U497B_ARATH7.713e-5864.44UPF0497 membrane protein At2g37200 OS=Arabidopsis ... [more]
U4977_ARATH2.174e-5259.55UPF0497 membrane protein At2g28370 OS=Arabidopsis ... [more]
U497L_ARATH5.579e-2438.56UPF0497 membrane protein At3g53850 OS=Arabidopsis ... [more]
U497J_ARATH9.517e-2439.74UPF0497 membrane protein At3g23200 OS=Arabidopsis ... [more]
U497X_ARATH4.723e-2339.74UPF0497 membrane protein At5g02060 OS=Arabidopsis ... [more]
U4974_ARATH5.592e-1629.33Putative UPF0497 membrane protein At1g49405 OS=Ara... [more]
U497K_ARATH2.775e-1531.13UPF0497 membrane protein At3g50810 OS=Arabidopsis ... [more]
U497W_ARATH5.417e-1130.56UPF0497 membrane protein At4g37235 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_5935 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE56H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739472 ID=CK739472; Name=CK739472; organism=Citrus sinensis; type=EST; length=559bp
AATCGGGGGGGCTTATAACCGAAAGCGATGTTCGCGAGCCGGCCAGCGGT
GCACCCAGTGGAGGCGCCACCGTTGACTGAGGCGGCGGGACTTAGAGTTA
GAATGAAGGATGTGCAAGGCATGCCTGGGACACCTGGCGGCCTTGTTCTT
CGTCTTCTTCAGTTTGTTTTCGCAGCCATAGCAGTCTCTGTCATGGCCTC
CACCAGTGATTTTCACGAAGCCACCGCTTTTTGCTACCTAGTTCTTGCTC
TAGGCTTGCAAAGTTTGTGGAGTCTATCCCTGTTAGTGCTTGATATATAT
GCTATCCTGGTGAGAAGAAGTCTGCGGAATGATAAGGTTATCCGTTTATT
TACCGTTGGTGATGGGATCACATCCACCCTTACATATGCAGCCGCCTGCT
CATCTGCAGGAATCACAGTTCTTATCAGCAATGATCTTAACCGATGTGGA
ATTAACCACTGTACAAGGTTTGAGACTGCTACGGCAATGGCTTTTATCAG
TTGGTTTGCTACTTCACCATCCTTTCTCCTGAATTTCTGGTCATTGGCTT
CCCACTAAG
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