CK739485

Overview
NameCK739485
Unique NameCK739485
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length390
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739485 vs. ExPASy Swiss-Prot
Match: GCSH_FLAPU (Glycine cleavage system H protein, mitochondrial (Fragment) OS=Flaveria pubescens GN=GDCSH PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 3.792e-55
Identity = 104/127 (81.89%), Postives = 115/127 (90.55%), Query Frame = 2
Query:    8 MALRMWASSTANALRISCASKTPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYE 388
            MALRMWASSTANALR+S A++     LSRCFSSVLDGLKYA+SHEWVKHEGSVATVGITDHAQDHLGEVVFV+LPE G SV +  GFG VESVKATSDVNSPISGE++EVNSKL++TPGL+NSSPYE
Sbjct:    1 MALRMWASSTANALRLSSATRPHYSPLSRCFSSVLDGLKYANSHEWVKHEGSVATVGITDHAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPGLINSSPYE 127          
BLAST of CK739485 vs. ExPASy Swiss-Prot
Match: GCSH_FLAAN (Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala GN=GDCSH PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 4.953e-55
Identity = 103/127 (81.10%), Postives = 115/127 (90.55%), Query Frame = 2
Query:    8 MALRMWASSTANALRISCASKTPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYE 388
            MALRMWASSTANALR+S A++     LSRCFSSVLDGLKYA+SHEWVKHEGSVAT+GITDHAQDHLGEVVFV+LPE G SV +  GFG VESVKATSDVNSPISGE++EVNSKL++TPGL+NSSPYE
Sbjct:    1 MALRMWASSTANALRLSSATRPHFSPLSRCFSSVLDGLKYANSHEWVKHEGSVATIGITDHAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPGLINSSPYE 127          
BLAST of CK739485 vs. ExPASy Swiss-Prot
Match: GCSH_FLAPR (Glycine cleavage system H protein, mitochondrial OS=Flaveria pringlei GN=GDCSH PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 1.441e-54
Identity = 102/127 (80.31%), Postives = 115/127 (90.55%), Query Frame = 2
Query:    8 MALRMWASSTANALRISCASKTPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYE 388
            MALR+WASSTANALR+S A++     LSRCFSSVLDGLKYA+SHEWVKHEGSVAT+GITDHAQDHLGEVVFV+LPE G SV +  GFG VESVKATSDVNSPISGE++EVNSKL++TPGL+NSSPYE
Sbjct:    1 MALRIWASSTANALRLSSATRPHFSPLSRCFSSVLDGLKYANSHEWVKHEGSVATIGITDHAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPGLINSSPYE 127          
BLAST of CK739485 vs. ExPASy Swiss-Prot
Match: GCSH_PEA (Glycine cleavage system H protein, mitochondrial OS=Pisum sativum GN=GDCSH PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 3.210e-54
Identity = 104/130 (80.00%), Postives = 116/130 (89.23%), Query Frame = 2
Query:    8 MALRMWASSTANALRISCASK---TPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYE 388
            MALRMWASSTANAL++S +S+   +P F++SRCFS+VLDGLKYA SHEWVKHEGSVAT+GITDHAQDHLGEVVFVELPE G SV +G GFG VESVKATSDVNSPISGEVIEVN+ LT  PGL+NSSPYE
Sbjct:    1 MALRMWASSTANALKLSSSSRLHLSPTFSISRCFSNVLDGLKYAPSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYE 130          
BLAST of CK739485 vs. ExPASy Swiss-Prot
Match: GCSH_ORYSJ (Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. japonica GN=GDCSH PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 3.550e-53
Identity = 100/130 (76.92%), Postives = 116/130 (89.23%), Query Frame = 2
Query:    8 MALRMWASSTANALRISCASKT---PAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYE 388
            MALR+WASS ANAL+ISC+  T   PA+++SR FS+VLDGLKY+SSHEWVK++GSVAT+GITDHAQ HLGEVVFVELPE GA V QGG FG VESVKATSD+NSPISGEV+EVN KL++TPGL+NSSPYE
Sbjct:    1 MALRLWASSAANALKISCSGATRAAPAYSISRYFSTVLDGLKYSSSHEWVKNDGSVATIGITDHAQGHLGEVVFVELPEAGAKVSQGGAFGNVESVKATSDINSPISGEVVEVNDKLSETPGLINSSPYE 130          
BLAST of CK739485 vs. ExPASy Swiss-Prot
Match: GCSH_ORYSI (Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. indica GN=GDCSH PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 3.550e-53
Identity = 100/130 (76.92%), Postives = 116/130 (89.23%), Query Frame = 2
Query:    8 MALRMWASSTANALRISCASKT---PAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYE 388
            MALR+WASS ANAL+ISC+  T   PA+++SR FS+VLDGLKY+SSHEWVK++GSVAT+GITDHAQ HLGEVVFVELPE GA V QGG FG VESVKATSD+NSPISGEV+EVN KL++TPGL+NSSPYE
Sbjct:    1 MALRLWASSAANALKISCSGATRAAPAYSISRYFSTVLDGLKYSSSHEWVKNDGSVATIGITDHAQGHLGEVVFVELPEAGAKVSQGGAFGNVESVKATSDINSPISGEVVEVNDKLSETPGLINSSPYE 130          
BLAST of CK739485 vs. ExPASy Swiss-Prot
Match: GCSH_FLATR (Glycine cleavage system H protein, mitochondrial OS=Flaveria trinervia GN=GDCSH PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 3.005e-52
Identity = 102/129 (79.07%), Postives = 112/129 (86.82%), Query Frame = 2
Query:    8 MALRMWASSTANALRISCASKTPAFALSRCFSS--VLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYE 388
            MALR+WASSTA ALR+S AS+     L RCFSS  VLDGLKYA+SHEWVKHEGSVAT+GITDHAQDHLGEVVFVELPE G SV +  GFG VESVKATSDVNSPISGE++EVNSKLT+TPGL+N SPYE
Sbjct:    1 MALRIWASSTAKALRLSSASRPHFSPLFRCFSSAAVLDGLKYANSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEVGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLTKTPGLINKSPYE 129          
BLAST of CK739485 vs. ExPASy Swiss-Prot
Match: GCSH_FLAAU (Glycine cleavage system H protein, mitochondrial (Fragment) OS=Flaveria australasica GN=GDCSH PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 3.005e-52
Identity = 102/129 (79.07%), Postives = 112/129 (86.82%), Query Frame = 2
Query:    8 MALRMWASSTANALRISCASKTPAFALSRCFSS--VLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYE 388
            MALR+WASSTA ALR+S AS+     L RCFSS  VLDGLKYA+SHEWVKHEGSVAT+GITDHAQDHLGEVVFVELPE G SV +  GFG VESVKATSDVNSPISGE++EVNSKLT+TPGL+N SPYE
Sbjct:    1 MALRIWASSTAKALRLSSASRPHFSPLFRCFSSAAVLDGLKYANSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEVGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLTKTPGLINKSPYE 129          
BLAST of CK739485 vs. ExPASy Swiss-Prot
Match: GCSH2_ARATH (Probable glycine cleavage system H protein 2, mitochondrial OS=Arabidopsis thaliana GN=At1g32470 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 5.126e-52
Identity = 102/131 (77.86%), Postives = 118/131 (90.08%), Query Frame = 2
Query:    8 MALRMWASSTANALRISC-ASKT---PAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYE 388
            MALRMWASSTANAL++S  ASK+   PAF++SRCFSSVL+GLKYA+SHEWVKHEGSVAT+GITDHAQDHLGEVVFVELPE  +SV +   FG VESVKATS++ SPISGEVIEVN+KLT++PGL+NSSPYE
Sbjct:    1 MALRMWASSTANALKLSSSASKSHLLPAFSISRCFSSVLEGLKYANSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEANSSVSKEKSFGAVESVKATSEILSPISGEVIEVNTKLTESPGLINSSPYE 131          
BLAST of CK739485 vs. ExPASy Swiss-Prot
Match: GCSH_MESCR (Glycine cleavage system H protein, mitochondrial OS=Mesembryanthemum crystallinum GN=GDCSH PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.396e-49
Identity = 99/130 (76.15%), Postives = 111/130 (85.38%), Query Frame = 2
Query:    8 MALRMWASSTANALRISCASKT---PAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYE 388
            MALRMWASS ANAL +SCA K+   PA +LSRCFS+VLDGLKYASSHEWVKH GSVAT+GITDHAQ HLG+VVF ELPE GA V  G  F  VESVKATSDVNSPISGE++EVN+KL+ +PGL+NSSPYE
Sbjct:    1 MALRMWASSAANALGVSCAPKSHLLPALSLSRCFSTVLDGLKYASSHEWVKHGGSVATIGITDHAQGHLGDVVFAELPEGGA-VSAGKPFASVESVKATSDVNSPISGEIVEVNTKLSDSPGLLNSSPYE 129          
The following BLAST results are available for this feature:
BLAST of CK739485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 451
Match NameE-valueIdentityDescription
GCSH_FLAPU3.792e-5581.89Glycine cleavage system H protein, mitochondrial (... [more]
GCSH_FLAAN4.953e-5581.10Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_FLAPR1.441e-5480.31Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_PEA3.210e-5480.00Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_ORYSJ3.550e-5376.92Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_ORYSI3.550e-5376.92Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_FLATR3.005e-5279.07Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_FLAAU3.005e-5279.07Glycine cleavage system H protein, mitochondrial (... [more]
GCSH2_ARATH5.126e-5277.86Probable glycine cleavage system H protein 2, mito... [more]
GCSH_MESCR1.396e-4976.15Glycine cleavage system H protein, mitochondrial O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6323 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739485 ID=CK739485; Name=CK739485; organism=Citrus sinensis; type=EST; length=390bp
ATAAGGCATGGCACTCAGAATGTGGGCGTCGTCTACTGCCAATGCTCTTA
GAATTTCCTGCGCCTCCAAAACTCCTGCATTTGCCCTCTCCAGATGCTTC
TCTTCTGTCTTGGATGGGTTGAAATATGCATCCTCGCATGAATGGGTGAA
GCATGAAGGCTCTGTGGCTACTGTTGGCATCACTGATCATGCCCAGGATC
ATCTTGGAGAAGTAGTGTTTGTGGAGCTGCCAGAAACTGGTGCCTCAGTC
AAACAAGGCGGCGGCTTCGGGGTTGTAGAAAGTGTGAAAGCAACCAGTGA
CGTTAATTCCCCCATTTCTGGTGAAGTTATTGAGGTTAACTCCAAGCTCA
CCCAAACGCCTGGCTTGGTCAATTCAAGCCCATATGAAGA
back to top