CK739497

Overview
NameCK739497
Unique NameCK739497
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length457
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739497 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 239.965 bits (611), Expect = 9.367e-74
Identity = 118/128 (92.19%), Postives = 125/128 (97.66%), Query Frame = 2 
Query:   74 RTVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT*PMVVETFSDYPPLGRFAVRDMPQTVAVGVIKS 457
            + VAVKDLKRG+VASNSKDDPA+EAA+FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+ELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT PMVVETFS+YPPLGRFAVRDM QTVAVGVIK+
Sbjct:  301 KNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKN 428

HSP 2 Score: 56.9954 bits (136), Expect = 9.367e-74
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1 
Query:    1 VKSVEMHHEALQEALPGDNVGFNVKN 78
            VKSVEMHHEALQEALPGDNVGFNVKN
Sbjct:  277 VKSVEMHHEALQEALPGDNVGFNVKN 302
[Close]
BLAST of CK739497 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 1.222e-73
Identity = 118/128 (92.19%), Postives = 125/128 (97.66%), Query Frame = 2 
Query:   74 RTVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT*PMVVETFSDYPPLGRFAVRDMPQTVAVGVIKS 457
            + VAVKDLKRGFVASNSKDDPA+EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPT PMVVETF++YPPLGRFAVRDM QTVAVGVIKS
Sbjct:  301 KNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKS 428

HSP 2 Score: 54.6842 bits (130), Expect = 1.222e-73
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 1 
Query:    1 VKSVEMHHEALQEALPGDNVGFNVKN 78
            VKSVEMHHEAL EALPGDNVGFNVKN
Sbjct:  277 VKSVEMHHEALTEALPGDNVGFNVKN 302
[Close]
BLAST of CK739497 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.610e-73
Identity = 117/128 (91.41%), Postives = 123/128 (96.09%), Query Frame = 2 
Query:   74 RTVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT*PMVVETFSDYPPLGRFAVRDMPQTVAVGVIKS 457
            + VAVKDLKRG+VAS SKDDPA+EAA+FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+ELVTKIDRRSGKELEKEPKFLKNGDAGMVKM+PT PMVVETFS YPPLGRFAVRDM QTVAVGVIKS
Sbjct:  301 KNVAVKDLKRGYVASGSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKS 428

HSP 2 Score: 56.9954 bits (136), Expect = 4.610e-73
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1 
Query:    1 VKSVEMHHEALQEALPGDNVGFNVKN 78
            VKSVEMHHEALQEALPGDNVGFNVKN
Sbjct:  277 VKSVEMHHEALQEALPGDNVGFNVKN 302
[Close]
BLAST of CK739497 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.023e-72
Identity = 117/128 (91.41%), Postives = 122/128 (95.31%), Query Frame = 2 
Query:   74 RTVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT*PMVVETFSDYPPLGRFAVRDMPQTVAVGVIKS 457
            + VAVKDLKRG VASNSKDDPA+EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+E++TKIDRRSGKELEKEPKFLKNGDAG VKMIPT PMVVETFS YPPLGRFAVRDM QTVAVGVIKS
Sbjct:  301 KNVAVKDLKRGIVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSAYPPLGRFAVRDMRQTVAVGVIKS 428

HSP 2 Score: 56.9954 bits (136), Expect = 1.023e-72
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1 
Query:    1 VKSVEMHHEALQEALPGDNVGFNVKN 78
            VKSVEMHHEALQEALPGDNVGFNVKN
Sbjct:  277 VKSVEMHHEALQEALPGDNVGFNVKN 302
[Close]
BLAST of CK739497 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.739e-72
Identity = 115/128 (89.84%), Postives = 124/128 (96.88%), Query Frame = 2 
Query:   74 RTVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT*PMVVETFSDYPPLGRFAVRDMPQTVAVGVIKS 457
            + VAVKDLKRGFVASNSKDDPA+ AA+FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+E++TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPT PMVVETFS+YPPLGRFAVRDM QTVAVGVIK+
Sbjct:  301 KNVAVKDLKRGFVASNSKDDPAKGAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKN 428

HSP 2 Score: 56.9954 bits (136), Expect = 1.739e-72
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1 
Query:    1 VKSVEMHHEALQEALPGDNVGFNVKN 78
            VKSVEMHHEALQEALPGDNVGFNVKN
Sbjct:  277 VKSVEMHHEALQEALPGDNVGFNVKN 302
[Close]
BLAST of CK739497 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.031e-72
Identity = 115/128 (89.84%), Postives = 121/128 (94.53%), Query Frame = 2 
Query:   74 RTVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT*PMVVETFSDYPPLGRFAVRDMPQTVAVGVIKS 457
            + VAVKDLKRG+VASNSKDDPA+EAANFT+QVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+E+ TKIDRRSGKELEKEPKFLKNGDAG VKMIPT PMVVETF  YPPLGRFAVRDM QTVAVGVIKS
Sbjct:  301 KNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFMSYPPLGRFAVRDMRQTVAVGVIKS 428

HSP 2 Score: 56.9954 bits (136), Expect = 5.031e-72
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1 
Query:    1 VKSVEMHHEALQEALPGDNVGFNVKN 78
            VKSVEMHHEALQEALPGDNVGFNVKN
Sbjct:  277 VKSVEMHHEALQEALPGDNVGFNVKN 302
[Close]
BLAST of CK739497 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 1.116e-71
Identity = 116/128 (90.62%), Postives = 123/128 (96.09%), Query Frame = 2 
Query:   74 RTVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT*PMVVETFSDYPPLGRFAVRDMPQTVAVGVIKS 457
            + VAVKDLKRG+VASNSKDDPA+ AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSE++TKIDRRSGKE+EKEPKFLKNGDAGMVKM PT PMVVETFS+YPPLGRFAVRDM QTVAVGVIKS
Sbjct:  301 KNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKS 428

HSP 2 Score: 53.1434 bits (126), Expect = 1.116e-71
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 1 
Query:    1 VKSVEMHHEALQEALPGDNVGFNVKN 78
            VKSVEMHHE+L EALPGDNVGFNVKN
Sbjct:  277 VKSVEMHHESLLEALPGDNVGFNVKN 302
[Close]
BLAST of CK739497 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.455e-71
Identity = 112/128 (87.50%), Postives = 124/128 (96.88%), Query Frame = 2 
Query:   74 RTVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT*PMVVETFSDYPPLGRFAVRDMPQTVAVGVIKS 457
            + VAVKDLKRG+VASNSKDDPA+ AA+FT+QVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+E++TKIDRRSGKELEKEPKFLKNGDAGMVKMIPT PMVVETF++YPPLGRFAVRDM QTVAVGV+K+
Sbjct:  301 KNVAVKDLKRGYVASNSKDDPAKGAASFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVVKN 428

HSP 2 Score: 56.9954 bits (136), Expect = 1.455e-71
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1 
Query:    1 VKSVEMHHEALQEALPGDNVGFNVKN 78
            VKSVEMHHEALQEALPGDNVGFNVKN
Sbjct:  277 VKSVEMHHEALQEALPGDNVGFNVKN 302
[Close]
BLAST of CK739497 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 4.210e-71
Identity = 115/128 (89.84%), Postives = 123/128 (96.09%), Query Frame = 2 
Query:   74 RTVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT*PMVVETFSDYPPLGRFAVRDMPQTVAVGVIKS 457
            + VAVKDLK G VASNSKDDPA++AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPT PMVVETF++YPPLGRFAVRDM QTVAVGVIKS
Sbjct:  301 KNVAVKDLKHGLVASNSKDDPAKDAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKS 428

HSP 2 Score: 51.6026 bits (122), Expect = 4.210e-71
Identity = 24/26 (92.31%), Postives = 24/26 (92.31%), Query Frame = 1 
Query:    1 VKSVEMHHEALQEALPGDNVGFNVKN 78
            VKSVEMHHEAL EALPGDNV FNVKN
Sbjct:  277 VKSVEMHHEALTEALPGDNVRFNVKN 302
[Close]
BLAST of CK739497 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 9.338e-71
Identity = 115/128 (89.84%), Postives = 124/128 (96.88%), Query Frame = 2 
Query:   74 RTVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT*PMVVETFSDYPPLGRFAVRDMPQTVAVGVIKS 457
            + VAVKDLKRG+VASNSKDDPA+EAANFT+QVII+NHPGQIGNGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKELEKEPKFLKNGDAG VKMIPT PMVVETFS+YPPLGRFAVRDM QTVAVGVIK+
Sbjct:  301 KNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIINHPGQIGNGYAPVLDCHTSHIAVKFAELMTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKN 428

HSP 2 Score: 50.8322 bits (120), Expect = 9.338e-71
Identity = 23/26 (88.46%), Postives = 24/26 (92.31%), Query Frame = 1 
Query:    1 VKSVEMHHEALQEALPGDNVGFNVKN 78
            VKSVEMHHE+L EA PGDNVGFNVKN
Sbjct:  277 VKSVEMHHESLTEAHPGDNVGFNVKN 302
The following BLAST results are available for this feature:
BLAST of CK739497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_ORYSJ9.367e-7492.19Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_VICFA1.222e-7392.19Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A_MAIZE4.610e-7391.41Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A_MANES1.023e-7291.41Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A_TOBAC1.739e-7289.84Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A2_DAUCA5.031e-7289.84Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]
EF1A_ARATH1.116e-7190.63Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A_SOLLC1.455e-7187.50Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A_PEA4.210e-7189.84Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]
EF1A_SOYBN9.338e-7189.84Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6335 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739497 ID=CK739497; Name=CK739497; organism=Citrus sinensis; type=EST; length=457bp
GTTAAGTCTGTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGG
TGACAATGTTGGCTTCAACGTGAAGAACCGTTGCTGTCAAGGATCTCAAG
CGTGGTTTTGTTGCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGC
CAACTTCACTTCACAGGTCATCATCATGAACCATCCTGGCCAGATTGGAA
ATGGATATGCCCCAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAG
TTTTCTGAGCTCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGA
GAAGGAGCCCAAGTTCTTGAAGAATGGAGATGCCGGAATGGTTAAGATGA
TTCCCACCTAGCCCATGGTTGTTGAGACATTCTCCGACTACCCACCCCTT
GGTCGTTTTGCTGTTAGGGACATGCCTCAGACTGTTGCTGTGGGTGTTAT
CAAGAGT
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