CK739506

Overview
NameCK739506
Unique NameCK739506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK739506 vs. ExPASy Swiss-Prot
Match: NOTUM_MOUSE (Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.902e-17
Identity = 55/145 (37.93%), Postives = 76/145 (52.41%), Query Frame = 2 
Query:  203 CLDGTLPGYHIHRGSGSGANSWLIHLEGGGWCNTIRNCVYRKTTRRG--SAKFMEKQLPFTGILSNKAEENPDFFNWNRVKLRYCDGASFSGDSQNEGAQLY-FRGQRIWVTAMQDLMAKGMQNADQALLSGCSAGGLASILHCD 628
            C DG+  GY++    GS    WL+ LEGG +C    NC  R +T R   S+K        TGILS++ EENP ++N N V + YC    +SG S       Y F G  I    +++L+ KG+  A   LL+G SAGG   +L+ D
Sbjct:  108 CNDGSPAGYYLKESKGS--RRWLLFLEGGWYCFNRENCDSRYSTMRRLMSSKDWPHTRTGTGILSSQPEENPHWWNANMVFIPYCSSDVWSGASPKSDKNEYAFMGSLIIQEVVRELLGKGLSGAKVLLLAGSSAGGTGVLLNVD 250
[Close]
BLAST of CK739506 vs. ExPASy Swiss-Prot
Match: NOTUM_HUMAN (Protein notum homolog OS=Homo sapiens GN=NOTUM PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.433e-16
Identity = 53/145 (36.55%), Postives = 79/145 (54.48%), Query Frame = 2 
Query:  203 CLDGTLPGYHIHRGSGSGANSWLIHLEGGGWCNTIRNCVYRKTTRRG--SAKFMEKQLPFTGILSNKAEENPDFFNWNRVKLRYCDGASFSG-DSQNEGAQLYFRGQRIWVTAMQDLMAKGMQNADQALLSGCSAGGLASILHCD 628
            C DG+  GY++    GS    WL+ LEGG +C    NC  R  T R   S++   +    TGILS++ EENP ++N N V + YC    +SG  S++E  +  F G  I    +++L+ +G+  A   LL+G SAGG   +L+ D
Sbjct:  101 CNDGSPAGYYLKESRGS--RRWLLFLEGGWYCFNRENCDSRYDTMRRLMSSRDWPRTRTGTGILSSQPEENPYWWNANMVFIPYCSSDVWSGASSKSEKNEYAFMGALIIQEVVRELLGRGLSGAKVLLLAGSSAGGTGVLLNVD 243
The following BLAST results are available for this feature:
BLAST of CK739506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NOTUM_MOUSE4.902e-1737.93Protein notum homolog OS=Mus musculus GN=Notum PE=... [more]
NOTUM_HUMAN2.433e-1636.55Protein notum homolog OS=Homo sapiens GN=NOTUM PE=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6344 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62C07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739506 ID=CK739506; Name=CK739506; organism=Citrus sinensis; type=EST; length=629bp
CCCCCGGGCTGCAGGGAAAATGAAGCCGATGTTGTATTTCTGCTTCGTGA
TTGTTTTGATCCGCTCTGCGAGTGGCTTCTTCGAGGATTTGGATGCTCGA
GAGACTTCGCTTTCTTACTTAGAAAACGATGCTGCTGCTACGTCCGAGCC
TCTCATGGTCCCTCTCACGCTTATTCAGGGAGCTGATTCCAAAGGAGCTG
TCTGTTTGGATGGCACGCTGCCTGGTTATCATATACACCGGGGTTCTGGA
TCGGGAGCAAACAGCTGGCTCATTCATTTGGAAGGAGGTGGATGGTGTAA
TACCATTAGAAATTGTGTGTACCGCAAAACCACCCGCCGTGGATCAGCAA
AATTTATGGAAAAGCAGCTACCATTTACCGGCATATTGAGCAACAAAGCT
GAAGAAAATCCAGATTTCTTCAACTGGAACAGAGTAAAGCTGCGTTACTG
TGACGGGGCTTCGTTTAGTGGAGATAGTCAAAATGAGGGAGCACAACTTT
ATTTTCGAGGACAACGTATTTGGGTAACTGCTATGCAAGATTTAATGGCC
AAGGGAATGCAGAATGCTGACCAGGCTCTTCTTTCTGGATGCTCTGCGGG
AGGGCTGGCATCCATTCTTCATTGTGATG
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