CK739507 | Citrus Genome Database

Overview


Name	CK739507
Unique Name	CK739507
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	297

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL23_TOBAC (60S ribosomal protein L23 OS=Nicotiana tabacum GN=RPL23 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.771e-38
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 1

Query:   76 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 297
            GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL K VMPAV+VRQRKPWRRKDGVFMYFEDNAGVIV
Sbjct:   33 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVVVRQRKPWRRKDGVFMYFEDNAGVIV 106

HSP 2 Score: 29.261 bits (64), Expect = 8.771e-38
Identity = 14/17 (82.35%), Postives = 14/17 (82.35%), Query Frame = 2

Query:    2 STCNKFMMSLGLPVAAT 52
            S  NKF MSLGLPVAAT
Sbjct:    9 SAGNKFRMSLGLPVAAT 25

HSP 3 Score: 20.7866 bits (42), Expect = 8.771e-38
Identity = 7/10 (70.00%), Postives = 8/10 (80.00%), Query Frame = 3

Query:   54 VNCADNTWGK 83
            +NCADNT  K
Sbjct:   26 INCADNTGAK 35

[Close]

BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL23_ARATH (60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 1.482e-37
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 1

Query:   76 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 297
            GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL K V+PAVIVRQRKPWRRKDGVFMYFEDNAGVIV
Sbjct:   33 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 106

HSP 2 Score: 28.8758 bits (63), Expect = 1.482e-37
Identity = 13/14 (92.86%), Postives = 13/14 (92.86%), Query Frame = 2

Query:   11 NKFMMSLGLPVAAT 52
            NKF MSLGLPVAAT
Sbjct:   12 NKFRMSLGLPVAAT 25

HSP 3 Score: 21.1718 bits (43), Expect = 1.482e-37
Identity = 8/10 (80.00%), Postives = 8/10 (80.00%), Query Frame = 3

Query:   54 VNCADNTWGK 83
            VNCADNT  K
Sbjct:   26 VNCADNTGAK 35

[Close]

BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL23_TORRU (60S ribosomal protein L23 OS=Tortula ruralis GN=RPL23 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 8.909e-33
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 1

Query:   76 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 297
            GAKNLY+IS  G++GRLNRLP+A VGDMVMATVKKGKPDL K VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV
Sbjct:   33 GAKNLYVIS-SGVRGRLNRLPAAAVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 105

HSP 2 Score: 26.1794 bits (56), Expect = 8.909e-33
Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 2

Query:    2 STCNKFMMSLGLPVAA 49
            S+ NKF MSLGLPV A
Sbjct:    9 SSGNKFRMSLGLPVGA 24

HSP 3 Score: 21.1718 bits (43), Expect = 8.909e-33
Identity = 8/10 (80.00%), Postives = 8/10 (80.00%), Query Frame = 3

Query:   54 VNCADNTWGK 83
            VNCADNT  K
Sbjct:   26 VNCADNTGAK 35

[Close]

BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL23_DANRE (60S ribosomal protein L23 OS=Danio rerio GN=rpl23 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.665e-30
Identity = 64/74 (86.49%), Postives = 69/74 (93.24%), Query Frame = 1

Query:   76 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 297
            GAKNLYIISVKGIKGRLNRLPSA VGDMVMATVKKGKP+L K V PAV++RQRK +RRKDGVF+YFEDNAGVIV
Sbjct:   33 GAKNLYIISVKGIKGRLNRLPSAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIV 106

HSP 2 Score: 21.557 bits (44), Expect = 1.665e-30
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 2

Query:   14 KFMMSLGLPVAA 49
            KF +SLGLPV A
Sbjct:   13 KFRISLGLPVGA 24

HSP 3 Score: 20.7866 bits (42), Expect = 1.665e-30
Identity = 7/10 (70.00%), Postives = 8/10 (80.00%), Query Frame = 3

Query:   54 VNCADNTWGK 83
            +NCADNT  K
Sbjct:   26 INCADNTGAK 35

[Close]

BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL23_RAT (60S ribosomal protein L23 OS=Rattus norvegicus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.647e-30
Identity = 63/74 (85.14%), Postives = 69/74 (93.24%), Query Frame = 1

Query:   76 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 297
            GAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+L K V PAV++RQRK +RRKDGVF+YFEDNAGVIV
Sbjct:   33 GAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIV 106

HSP 2 Score: 21.557 bits (44), Expect = 3.647e-30
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 2

Query:   14 KFMMSLGLPVAA 49
            KF +SLGLPV A
Sbjct:   13 KFRISLGLPVGA 24

HSP 3 Score: 20.7866 bits (42), Expect = 3.647e-30
Identity = 7/10 (70.00%), Postives = 8/10 (80.00%), Query Frame = 3

Query:   54 VNCADNTWGK 83
            +NCADNT  K
Sbjct:   26 INCADNTGAK 35

[Close]

BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL23_PIG (60S ribosomal protein L23 OS=Sus scrofa GN=RPL23 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.647e-30
Identity = 63/74 (85.14%), Postives = 69/74 (93.24%), Query Frame = 1

Query:   76 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 297
            GAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+L K V PAV++RQRK +RRKDGVF+YFEDNAGVIV
Sbjct:   33 GAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIV 106

HSP 2 Score: 21.557 bits (44), Expect = 3.647e-30
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 2

Query:   14 KFMMSLGLPVAA 49
            KF +SLGLPV A
Sbjct:   13 KFRISLGLPVGA 24

HSP 3 Score: 20.7866 bits (42), Expect = 3.647e-30
Identity = 7/10 (70.00%), Postives = 8/10 (80.00%), Query Frame = 3

Query:   54 VNCADNTWGK 83
            +NCADNT  K
Sbjct:   26 INCADNTGAK 35

[Close]

BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL23_MOUSE (60S ribosomal protein L23 OS=Mus musculus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.647e-30
Identity = 63/74 (85.14%), Postives = 69/74 (93.24%), Query Frame = 1

Query:   76 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 297
            GAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+L K V PAV++RQRK +RRKDGVF+YFEDNAGVIV
Sbjct:   33 GAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIV 106

HSP 2 Score: 21.557 bits (44), Expect = 3.647e-30
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 2

Query:   14 KFMMSLGLPVAA 49
            KF +SLGLPV A
Sbjct:   13 KFRISLGLPVGA 24

HSP 3 Score: 20.7866 bits (42), Expect = 3.647e-30
Identity = 7/10 (70.00%), Postives = 8/10 (80.00%), Query Frame = 3

Query:   54 VNCADNTWGK 83
            +NCADNT  K
Sbjct:   26 INCADNTGAK 35

[Close]

BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL23_ICTPU (60S ribosomal protein L23 OS=Ictalurus punctatus GN=rpl23 PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 3.647e-30
Identity = 63/74 (85.14%), Postives = 69/74 (93.24%), Query Frame = 1

Query:   76 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 297
            GAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+L K V PAV++RQRK +RRKDGVF+YFEDNAGVIV
Sbjct:   33 GAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIV 106

HSP 2 Score: 21.557 bits (44), Expect = 3.647e-30
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 2

Query:   14 KFMMSLGLPVAA 49
            KF +SLGLPV A
Sbjct:   13 KFRISLGLPVGA 24

HSP 3 Score: 20.7866 bits (42), Expect = 3.647e-30
Identity = 7/10 (70.00%), Postives = 8/10 (80.00%), Query Frame = 3

Query:   54 VNCADNTWGK 83
            +NCADNT  K
Sbjct:   26 INCADNTGAK 35

[Close]

BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL23_HUMAN (60S ribosomal protein L23 OS=Homo sapiens GN=RPL23 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.647e-30
Identity = 63/74 (85.14%), Postives = 69/74 (93.24%), Query Frame = 1

Query:   76 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 297
            GAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+L K V PAV++RQRK +RRKDGVF+YFEDNAGVIV
Sbjct:   33 GAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIV 106

HSP 2 Score: 21.557 bits (44), Expect = 3.647e-30
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 2

Query:   14 KFMMSLGLPVAA 49
            KF +SLGLPV A
Sbjct:   13 KFRISLGLPVGA 24

HSP 3 Score: 20.7866 bits (42), Expect = 3.647e-30
Identity = 7/10 (70.00%), Postives = 8/10 (80.00%), Query Frame = 3

Query:   54 VNCADNTWGK 83
            +NCADNT  K
Sbjct:   26 INCADNTGAK 35

[Close]

BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL23_BOVIN (60S ribosomal protein L23 OS=Bos taurus GN=RPL23 PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 3.647e-30
Identity = 63/74 (85.14%), Postives = 69/74 (93.24%), Query Frame = 1

Query:   76 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 297
            GAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+L K V PAV++RQRK +RRKDGVF+YFEDNAGVIV
Sbjct:   33 GAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIV 106

HSP 2 Score: 21.557 bits (44), Expect = 3.647e-30
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 2

Query:   14 KFMMSLGLPVAA 49
            KF +SLGLPV A
Sbjct:   13 KFRISLGLPVGA 24

HSP 3 Score: 20.7866 bits (42), Expect = 3.647e-30
Identity = 7/10 (70.00%), Postives = 8/10 (80.00%), Query Frame = 3

Query:   54 VNCADNTWGK 83
            +NCADNT  K
Sbjct:   26 INCADNTGAK 35

The following BLAST results are available for this feature:

BLAST of CK739507 vs. ExPASy Swiss-Prot

BLAST of CK739507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73


Match Name	E-value	Identity	Description
RL23_TOBAC	8.771e-38	95.95	60S ribosomal protein L23 OS=Nicotiana tabacum GN=...	[more]
RL23_ARATH	1.482e-37	95.95	60S ribosomal protein L23 OS=Arabidopsis thaliana ...	[more]
RL23_TORRU	8.909e-33	87.84	60S ribosomal protein L23 OS=Tortula ruralis GN=RP...	[more]
RL23_DANRE	1.665e-30	86.49	60S ribosomal protein L23 OS=Danio rerio GN=rpl23 ...	[more]
RL23_RAT	3.647e-30	85.14	60S ribosomal protein L23 OS=Rattus norvegicus GN=...	[more]
RL23_PIG	3.647e-30	85.14	60S ribosomal protein L23 OS=Sus scrofa GN=RPL23 P...	[more]
RL23_MOUSE	3.647e-30	85.14	60S ribosomal protein L23 OS=Mus musculus GN=Rpl23...	[more]
RL23_ICTPU	3.647e-30	85.14	60S ribosomal protein L23 OS=Ictalurus punctatus G...	[more]
RL23_HUMAN	3.647e-30	85.14	60S ribosomal protein L23 OS=Homo sapiens GN=RPL23...	[more]
RL23_BOVIN	3.647e-30	85.14	60S ribosomal protein L23 OS=Bos taurus GN=RPL23 P...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_6345 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62C11 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK739507 ID=CK739507; Name=CK739507; organism=Citrus sinensis; type=EST; length=297bp
ATCAACATGTAACAAGTTCATGATGTCACTGGGTTTGCCAGTGGCAGCAA
CCTGTGAACTGTGCTGACAACACCTGGGGCAAAGAACCTTTACATCATCT
CAGTTAAGGGAATCAAAGGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTT
GGAGACATGGTTATGGCTACTGTGAAGAAAGGGAAGCCTGATCTTATGAA
GAATGTGATGCCCGCCGTCATTGTAAGGCAGCGCAAGCCATGGCGCAGAA
AGGATGGTGTCTTCATGTACTTTGAAGATAATGCAGGTGTTATTGTG