CK739508

Overview
NameCK739508
Unique NameCK739508
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length306
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739508 vs. ExPASy Swiss-Prot
Match: RR18_CITSI (30S ribosomal protein S18, chloroplastic OS=Citrus sinensis GN=rps18 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.031e-24
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 3
Query:    3 KILSRRVNRLTLKEQRLITIAIKQARILSSLPFLNNEKQFERSGLTARPPGLRTRKK 173
            KILSRRVNRLTLKEQRLITIAIKQARILSSLPFLNNEKQFERSGLTARPPGLRTRKK
Sbjct:   45 KILSRRVNRLTLKEQRLITIAIKQARILSSLPFLNNEKQFERSGLTARPPGLRTRKK 101          
BLAST of CK739508 vs. ExPASy Swiss-Prot
Match: RR18_VITVI (30S ribosomal protein S18, chloroplastic OS=Vitis vinifera GN=rps18 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.153e-19
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 3
Query:    3 KILSRRVNRLTLKEQRLITIAIKQARILSSLPFLNNEKQFERSGLTARPPGLRTRKK 173
            KILSRRVNRLTLK+QRLITIAIKQARILSSLPFLNNEKQFER+  TAR  GLRTR K
Sbjct:   45 KILSRRVNRLTLKQQRLITIAIKQARILSSLPFLNNEKQFERTESTARTTGLRTRNK 101          
BLAST of CK739508 vs. ExPASy Swiss-Prot
Match: RR18_POPTR (30S ribosomal protein S18, chloroplastic OS=Populus trichocarpa GN=rps18 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.153e-19
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = 3
Query:    3 KILSRRVNRLTLKEQRLITIAIKQARILSSLPFLNNEKQFERSGLTARPPGLRTRKK 173
            KILSRRVNRLTLK+QRLITIAIKQARILSSLPFLNNE+QFE++ L AR  GLRTRKK
Sbjct:   45 KILSRRVNRLTLKQQRLITIAIKQARILSSLPFLNNERQFEKNELVARTTGLRTRKK 101          
BLAST of CK739508 vs. ExPASy Swiss-Prot
Match: RR18_POPAL (30S ribosomal protein S18, chloroplastic OS=Populus alba GN=rps18 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.153e-19
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = 3
Query:    3 KILSRRVNRLTLKEQRLITIAIKQARILSSLPFLNNEKQFERSGLTARPPGLRTRKK 173
            KILSRRVNRLTLK+QRLITIAIKQARILSSLPFLNNE+QFE++ L AR  GLRTRKK
Sbjct:   45 KILSRRVNRLTLKQQRLITIAIKQARILSSLPFLNNERQFEKNELVARTTGLRTRKK 101          
BLAST of CK739508 vs. ExPASy Swiss-Prot
Match: RR18_PLAOC (30S ribosomal protein S18, chloroplastic OS=Platanus occidentalis GN=rps18 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.355e-19
Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 3
Query:    3 KILSRRVNRLTLKEQRLITIAIKQARILSSLPFLNNEKQFERSGLTARPPGLRTRKK 173
            KILSRRVNRLTLK+QRLITIAIKQARILSSLPFLNNEKQFER+  T R PG RTR K
Sbjct:   45 KILSRRVNRLTLKQQRLITIAIKQARILSSLPFLNNEKQFERAESTPRTPGPRTRNK 101          
BLAST of CK739508 vs. ExPASy Swiss-Prot
Match: RR18_CARPA (30S ribosomal protein S18, chloroplastic OS=Carica papaya GN=rps18 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.355e-19
Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 3
Query:    3 KILSRRVNRLTLKEQRLITIAIKQARILSSLPFLNNEKQFERSGLTARPPGLRTRKK 173
            KILSRRVNRLTLK+QRLITIAIKQARILSSLPFLNNEKQFERS  T +  GLRTR K
Sbjct:   45 KILSRRVNRLTLKQQRLITIAIKQARILSSLPFLNNEKQFERSESTTKTTGLRTRNK 101          
BLAST of CK739508 vs. ExPASy Swiss-Prot
Match: RR18_NANDO (30S ribosomal protein S18, chloroplastic OS=Nandina domestica GN=rps18 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.474e-19
Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 3
Query:    3 KILSRRVNRLTLKEQRLITIAIKQARILSSLPFLNNEKQFERSGLTARPPGLRTRKK 173
            KILSRRVNRLTLK+QRLITIAIKQARILSSLPFLNNEKQFER+  T R  G RTRKK
Sbjct:   44 KILSRRVNRLTLKQQRLITIAIKQARILSSLPFLNNEKQFERTESTPRTTGPRTRKK 100          
BLAST of CK739508 vs. ExPASy Swiss-Prot
Match: RR18_GOSHI (30S ribosomal protein S18, chloroplastic OS=Gossypium hirsutum GN=rps18 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.474e-19
Identity = 49/57 (85.96%), Postives = 50/57 (87.72%), Query Frame = 3
Query:    3 KILSRRVNRLTLKEQRLITIAIKQARILSSLPFLNNEKQFERSGLTARPPGLRTRKK 173
            KILSRRVNRLTLK+QRLITIAIKQARILSSLPFLNNEKQFERS  T R   LRTR K
Sbjct:   45 KILSRRVNRLTLKQQRLITIAIKQARILSSLPFLNNEKQFERSESTTRTTALRTRNK 101          
BLAST of CK739508 vs. ExPASy Swiss-Prot
Match: RR18_COFAR (30S ribosomal protein S18, chloroplastic OS=Coffea arabica GN=rps18 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.474e-19
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 3
Query:    3 KILSRRVNRLTLKEQRLITIAIKQARILSSLPFLNNEKQFERSGLTARPPGLRTRKK 173
            KILSRRVNRLTLK+QRLIT+AIKQARILS LPFLNNEKQFER+  TAR  GLRTR K
Sbjct:   45 KILSRRVNRLTLKQQRLITVAIKQARILSLLPFLNNEKQFERTESTARTTGLRTRNK 101          
BLAST of CK739508 vs. ExPASy Swiss-Prot
Match: RR18_PANGI (30S ribosomal protein S18, chloroplastic OS=Panax ginseng GN=rps18 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.275e-18
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 3
Query:    3 KILSRRVNRLTLKEQRLITIAIKQARILSSLPFLNNEKQFERSGLTARPPGLRTRKK 173
            KILSRRVNRLTLK+QRLITIAIKQARILS LPFLNN+KQFER+  TAR  GLR RKK
Sbjct:   45 KILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNDKQFERTESTARTAGLRARKK 101          
The following BLAST results are available for this feature:
BLAST of CK739508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RR18_CITSI2.031e-24100.0030S ribosomal protein S18, chloroplastic OS=Citrus... [more]
RR18_VITVI1.153e-1987.7230S ribosomal protein S18, chloroplastic OS=Vitis ... [more]
RR18_POPTR1.153e-1985.9630S ribosomal protein S18, chloroplastic OS=Populu... [more]
RR18_POPAL1.153e-1985.9630S ribosomal protein S18, chloroplastic OS=Populu... [more]
RR18_PLAOC3.355e-1985.9630S ribosomal protein S18, chloroplastic OS=Platan... [more]
RR18_CARPA3.355e-1985.9630S ribosomal protein S18, chloroplastic OS=Carica... [more]
RR18_NANDO7.474e-1985.9630S ribosomal protein S18, chloroplastic OS=Nandin... [more]
RR18_GOSHI7.474e-1985.9630S ribosomal protein S18, chloroplastic OS=Gossyp... [more]
RR18_COFAR7.474e-1984.2130S ribosomal protein S18, chloroplastic OS=Coffea... [more]
RR18_PANGI1.275e-1884.2130S ribosomal protein S18, chloroplastic OS=Panax ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6346 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739508 ID=CK739508; Name=CK739508; organism=Citrus sinensis; type=EST; length=306bp
GAAAAATATTATCTAGACGGGTGAATAGATTGACCTTAAAAGAACAACGA
TTAATTACTATTGCTATAAAACAAGCTCGTATTTTATCTTCGTTACCTTT
TCTTAATAATGAGAAACAATTTGAAAGAAGTGGGTTGACCGCTAGACCTC
CCGGTCTTAGAACCAGAAAAAAATAGGCTTACTCTTCAATTAAATAAAAA
TTCCAATCTGAACTCAAACACAGATGGATGTTTTGTTCAAAAAATCTGTG
AAGCAGCAGTTACCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA
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