CK739509

Overview
NameCK739509
Unique NameCK739509
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length366
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739509 vs. ExPASy Swiss-Prot
Match: YERG_SCHPO (Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe GN=SPAC2F3.16 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.977e-15
Identity = 34/81 (41.98%), Postives = 45/81 (55.56%), Query Frame = 1
Query:  124 GCKHYRRRCKIRAPCCNEIFDCRHCHNEAASMLRNPYDRHELVRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICK 366
            GC HY R CK++   C+E + CRHCHN+A          H L R  V+ ++C +C   QP AQ C  C   MG Y+C+ CK
Sbjct:  141 GCSHYMRNCKVQCFDCHEWYTCRHCHNDACD--------HVLERPAVENMLCMICSKVQPAAQYCKYCKNCMGRYYCNKCK 213          
BLAST of CK739509 vs. ExPASy Swiss-Prot
Match: ZN363_HUMAN (RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.448e-14
Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 1
Query:  124 GCKHYRRRCKIRAPCCNEIFDCRHCHNEAASMLRNPYDRHELVRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDIC 363
            GC+HY R C ++APCC++++ CR CH+          + H+L R  VK+V C  C+  Q   Q C  C    GEY+CDIC
Sbjct:   19 GCEHYDRGCLLKAPCCDKLYTCRLCHDN--------NEDHQLDRFKVKEVQCINCEKIQHAQQTCEECSTLFGEYYCDIC 90          
BLAST of CK739509 vs. ExPASy Swiss-Prot
Match: ZN363_MOUSE (RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.503e-14
Identity = 32/80 (40.00%), Postives = 46/80 (57.50%), Query Frame = 1
Query:  124 GCKHYRRRCKIRAPCCNEIFDCRHCHNEAASMLRNPYDRHELVRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDIC 363
            GC+HY R C ++APCC++++ CR CH        +  + H+L R  VK+V C  C+  Q   Q C +C    GEY+C IC
Sbjct:   19 GCEHYDRACLLKAPCCDKLYTCRLCH--------DTNEDHQLDRFKVKEVQCINCEKLQHAQQTCEDCSTLFGEYYCSIC 90          
The following BLAST results are available for this feature:
BLAST of CK739509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
YERG_SCHPO4.977e-1541.98Uncharacterized RING finger protein C2F3.16 OS=Sch... [more]
ZN363_HUMAN1.448e-1441.25RING finger and CHY zinc finger domain-containing ... [more]
ZN363_MOUSE5.503e-1440.00RING finger and CHY zinc finger domain-containing ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6347 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739509 ID=CK739509; Name=CK739509; organism=Citrus sinensis; type=EST; length=366bp
CTATCTTCCCAAGTCAGGAAAGTCTCTTTCTTCTTCGTTTCGTTGGCTTT
GCCTTGCTTGCTCTGCAGATCCCCATGGAAGGCTCAGCCTAATGAACGTA
TTACTTTTGGGAAGATGGGCTATGGATGCAAGCATTATAGGAGGAGATGC
AAGATTCGAGCTCCTTGTTGCAACGAGATCTTTGATTGTCGCCATTGTCA
CAATGAGGCAGCGAGCATGTTAAGAAACCCTTACGATCGGCACGAATTAG
TGCGCCAAGATGTCAAACAAGTTATTTGTTCTGTTTGTGACACCGAGCAG
CCGGTTGCTCAAGTTTGTACTAACTGTGGCGTCAATATGGGGGAATATTT
CTGTGACATCTGCAAA
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