CK739512

Overview
NameCK739512
Unique NameCK739512
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length423
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739512 vs. ExPASy Swiss-Prot
Match: ARG2_PHAAU (Indole-3-acetic acid-induced protein ARG2 OS=Phaseolus aureus GN=ARG2 PE=2 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 3.334e-13
Identity = 28/46 (60.87%), Postives = 31/46 (67.39%), Query Frame = 3
Query:  171 MLKKPAEEMTGSSEKGSWVPDPVTGVYRPENLANELDGADLRAMFL 308
            M+ K  EE     EK SWVPDPVTG YRPEN  NE+D AD+RA  L
Sbjct:   49 MVPKSGEEKVRGGEKVSWVPDPVTGYYRPEN-TNEIDVADMRATVL 93          

HSP 2 Score: 38.1206 bits (87), Expect = 3.334e-13
Identity = 17/28 (60.71%), Postives = 21/28 (75.00%), Query Frame = 1
Query:   25 MARSFSNAKLFSALVADGISNAIYKRGY 108
            MARSF+N K+ SALVADG SN   + G+
Sbjct:    1 MARSFTNVKVLSALVADGFSNTTTRHGF 28          
BLAST of CK739512 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 8.080e-11
Identity = 24/47 (51.06%), Postives = 31/47 (65.96%), Query Frame = 3
Query:  174 LKKPAEEMTGSSEKGSWVPDPVTGVYRPENLANELDGADLRAMFLKH 314
            L+    E +G+S   +W PDP+TG YRPEN A E+D A+LR M L H
Sbjct:   48 LRPAVREDSGASS--AWAPDPITGYYRPENRAVEIDPAELREMLLNH 92          

HSP 2 Score: 34.6538 bits (78), Expect = 8.080e-11
Identity = 22/39 (56.41%), Postives = 25/39 (64.10%), Query Frame = 1
Query:   25 MARSFSNAKLFSALVADGISNAIYKRGY-----LGGITR 126
            MARS   AKL  A VADGIS +I +RGY     LG I+R
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISR 39          
The following BLAST results are available for this feature:
BLAST of CK739512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ARG2_PHAAU3.334e-1360.87Indole-3-acetic acid-induced protein ARG2 OS=Phase... [more]
LEA5_CITSI8.080e-1151.06Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6350 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739512 ID=CK739512; Name=CK739512; organism=Citrus sinensis; type=EST; length=423bp
CATCATCCCACATAACTAAGAAAAATGGCTCGCTCTTTCTCAAACGCTAA
GCTTTTCTCTGCTCTCGTCGCTGACGGAATCTCTAACGCCATCTACAAAA
GAGGATACCTCGGCGGCATCACAAGGCGGCTGTGTCGCGGGCAACAGGGG
GAGCTAGGAGTGCTGCTGCGATGTTGAAGAAACCAGCAGAAGAGATGACA
GGATCCAGTGAGAAGGGCTCGTGGGTCCCAGACCCAGTCACTGGTGTCTA
CAGGCCGGAGAATCTCGCCAACGAGCTCGATGGGGCCGACCTCAGAGCCA
TGTTCTTGAAGCACAACAACTGATCATCAAAATTAATAAGTATTATTATT
AATATATATTAATTCGGACATGGAAACTGAGGAAGGACGAAAGAAAAATT
AAAAAAAGGTTAAAAAGGGATTT
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