CK739514

Overview
NameCK739514
Unique NameCK739514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length352
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739514 vs. ExPASy Swiss-Prot
Match: NFS2_ARATH (Cysteine desulfurase 2, chloroplastic OS=Arabidopsis thaliana GN=NFS2 PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 5.736e-51
Identity = 94/117 (80.34%), Postives = 109/117 (93.16%), Query Frame = 2
Query:    2 IVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLL 352
            IVPWQ+V+QKTGA LKF+ LN+DE PD++KL+E++S KTKLV +HH+SN+LAS LPIEEIV W+HDVGAKVLVDACQSVPHMVVDVQ L+ADFLVASSHKMCGPTGIGFL+GKSDLL
Sbjct:  176 IVPWQIVSQKTGAVLKFVTLNEDEVPDINKLRELISPKTKLVAVHHVSNVLASSLPIEEIVVWAHDVGAKVLVDACQSVPHMVVDVQKLNADFLVASSHKMCGPTGIGFLYGKSDLL 292          
BLAST of CK739514 vs. ExPASy Swiss-Prot
Match: CSD_SYNY3 (Probable cysteine desulfurase OS=Synechocystis sp. (strain PCC 6803) GN=csd PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.340e-36
Identity = 72/117 (61.54%), Postives = 88/117 (75.21%), Query Frame = 2
Query:    2 IVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLL 352
            +VPWQ+VA KTGA LKF+ L++ ES DL+  K +LS KTKLV + HISN L  + P EEI   +H  GAKVLVDACQS PH  +DVQ +D D+LVAS HKMC PTGIGFL+GK ++L
Sbjct:  132 LVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEEIL 248          
BLAST of CK739514 vs. ExPASy Swiss-Prot
Match: CSD_BACSU (Probable cysteine desulfurase OS=Bacillus subtilis GN=csd PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.274e-30
Identity = 57/117 (48.72%), Postives = 82/117 (70.09%), Query Frame = 2
Query:    2 IVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLL 352
            I+PWQ   + TGA LK++ L +D +  L+ ++E ++  TK+V + H+SN+L ++ PI+E+   +HD GA ++VD  QS PHM +DVQ LD DF   SSHKMCGPTG+G L+GK  LL
Sbjct:  125 IIPWQQAVKATGATLKYIPLQEDGTISLEDVRETVTSNTKIVAVSHVSNVLGTVNPIKEMAKIAHDNGAVIVVDGAQSTPHMKIDVQDLDCDFFALSSHKMCGPTGVGVLYGKKALL 241          
BLAST of CK739514 vs. ExPASy Swiss-Prot
Match: CSD_STRCO (Probable cysteine desulfurase OS=Streptomyces coelicolor GN=csd PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.725e-29
Identity = 60/117 (51.28%), Postives = 83/117 (70.94%), Query Frame = 2
Query:    2 IVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLL 352
            IVPWQL+AQ+TGA L++  L DD   DL  + E+++ KTK+V    +SN+L +  P+E IV  + +VGA V +DA Q+ PHM +DVQ L ADF+  + HKMCGPTGIG L+G+ +LL
Sbjct:  137 IVPWQLLAQRTGAKLRWFGLTDDGRLDLSNIDEVITEKTKVVSFVLVSNILGTQNPVEAIVRRAQEVGALVCIDASQAAPHMPLDVQALQADFVAFTGHKMCGPTGIGVLWGRQELL 253          
BLAST of CK739514 vs. ExPASy Swiss-Prot
Match: SUFS_DICD3 (Cysteine desulfurase OS=Dickeya dadantii (strain 3937) GN=sufS PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.520e-27
Identity = 57/117 (48.72%), Postives = 79/117 (67.52%), Query Frame = 2
Query:    2 IVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLL 352
            IVPWQ++AQ  G  L+ L + DD   D+ +L  +L  +T+LV +  +SN+L ++ P+ EI+  +H  GAKVLVD  Q+V H  VDVQ LD DF   S HK+ GP+GIG L+GKS+LL
Sbjct:  132 IVPWQMLAQARGLTLRVLPITDDGELDMAQLPALLDERTRLVAVTQVSNVLGTVNPLAEIIRQAHACGAKVLVDGAQAVMHQAVDVQALDCDFYAFSGHKLYGPSGIGVLYGKSELL 248          
BLAST of CK739514 vs. ExPASy Swiss-Prot
Match: SUFS_ENTS8 (Cysteine desulfurase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=sufS PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.386e-27
Identity = 55/117 (47.01%), Postives = 79/117 (67.52%), Query Frame = 2
Query:    2 IVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLL 352
            IVPWQ++  +TGA L+ L +N D +  LDKL  ++  +T+L+ + H+SN+L +  PI +I+  +H  G KVLVD  Q+V H  VDVQ LD DF + S HK+ GPTGIG L+ K ++L
Sbjct:  127 IVPWQMLCARTGAELRVLPINQDGTLQLDKLPSLMDERTRLLAVTHVSNVLGTENPIADIIATAHQAGVKVLVDGAQAVMHHKVDVQALDCDFYLFSGHKLYGPTGIGILYAKEEIL 243          
BLAST of CK739514 vs. ExPASy Swiss-Prot
Match: CSD_BACHD (Probable cysteine desulfurase OS=Bacillus halodurans GN=csd PE=3 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 7.543e-27
Identity = 57/113 (50.44%), Postives = 77/113 (68.14%), Query Frame = 2
Query:    2 IVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGK 340
            I+PWQ VA+ TGA L +L L  D +  ++ +++ +S KTK+V I H+SN+L +I P++EI   +H  GA +LVD  QS PHM +DVQ L  DF   S HKM GPTGIG L+GK
Sbjct:  125 IIPWQQVAKATGATLTYLPLQKDGTIKIEDVEKTISEKTKIVAIMHVSNVLGTINPVKEIAEIAHRHGAIMLVDGAQSAPHMKIDVQELGCDFFAFSGHKMAGPTGIGVLYGK 237          
BLAST of CK739514 vs. ExPASy Swiss-Prot
Match: SUFS_ENT38 (Cysteine desulfurase OS=Enterobacter sp. (strain 638) GN=sufS PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.852e-27
Identity = 57/117 (48.72%), Postives = 80/117 (68.38%), Query Frame = 2
Query:    2 IVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLL 352
            IVPWQ++ +++GA L+ + LN D +  L++L  +L  +T+LV I  ISN+L +  P+ EI+  +H  GAKVLVD  Q+V H  +DVQ LD DF V S HK+ GPTGIG L+ K D+L
Sbjct:  127 IVPWQMLCERSGAQLRVIPLNVDGTLQLEQLDALLDARTRLVAITQISNVLGTANPVAEIIAKAHQAGAKVLVDGAQAVMHHTIDVQALDCDFYVFSGHKLYGPTGIGVLYVKEDIL 243          
BLAST of CK739514 vs. ExPASy Swiss-Prot
Match: SUFS_CITK8 (Cysteine desulfurase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=sufS PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.195e-26
Identity = 56/117 (47.86%), Postives = 78/117 (66.67%), Query Frame = 2
Query:    2 IVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLL 352
            IVPWQ++  +TGA L+ + LN D +  LD L  +   +T+L+ I H+SN+L +  P+ E++  +H  GAKVLVD  Q+V H  VDVQ LD DF V S HK+ GPTGIG L+ + +LL
Sbjct:  127 IVPWQMLCARTGAELRVIPLNTDGTLQLDTLPSLFDERTRLLAIAHVSNVLGTENPLPEMIALAHQYGAKVLVDGAQAVMHHAVDVQALDCDFYVFSGHKLYGPTGIGVLYVREELL 243          
BLAST of CK739514 vs. ExPASy Swiss-Prot
Match: CSD_STAES (Probable cysteine desulfurase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=csd PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.195e-26
Identity = 56/117 (47.86%), Postives = 78/117 (66.67%), Query Frame = 2
Query:    2 IVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLL 352
            IVPWQ +A++  A LKF+ +  D    LD +K  ++ KTK+V I H+SN+L +I  ++ I   +H+ GA + VD  QS PHM +D+Q +DADF   S HKM GPTGIG L+GK +LL
Sbjct:  130 IVPWQQLAKRKNATLKFIPMTKDGELQLDDIKATINDKTKIVAIAHVSNVLGTINDVKTIAKIAHEHGAVISVDGAQSAPHMALDMQDIDADFYSFSGHKMLGPTGIGVLYGKRELL 246          
The following BLAST results are available for this feature:
BLAST of CK739514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
NFS2_ARATH5.736e-5180.34Cysteine desulfurase 2, chloroplastic OS=Arabidops... [more]
CSD_SYNY32.340e-3661.54Probable cysteine desulfurase OS=Synechocystis sp.... [more]
CSD_BACSU4.274e-3048.72Probable cysteine desulfurase OS=Bacillus subtilis... [more]
CSD_STRCO4.725e-2951.28Probable cysteine desulfurase OS=Streptomyces coel... [more]
SUFS_DICD31.520e-2748.72Cysteine desulfurase OS=Dickeya dadantii (strain 3... [more]
SUFS_ENTS83.386e-2747.01Cysteine desulfurase OS=Enterobacter sakazakii (st... [more]
CSD_BACHD7.543e-2750.44Probable cysteine desulfurase OS=Bacillus halodura... [more]
SUFS_ENT389.852e-2748.72Cysteine desulfurase OS=Enterobacter sp. (strain 6... [more]
SUFS_CITK82.195e-2647.86Cysteine desulfurase OS=Citrobacter koseri (strain... [more]
CSD_STAES2.195e-2647.86Probable cysteine desulfurase OS=Staphylococcus ep... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6352 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739514 ID=CK739514; Name=CK739514; organism=Citrus sinensis; type=EST; length=352bp
CATCGTTCCCTGGCAGCTTGTAGCTCAAAAGACTGGTGCCAATTTGAAGT
TTTTGAATTTAAATGATGATGAAAGTCCTGATCTTGACAAGTTGAAGGAA
ATGCTTTCAAGGAAAACCAAACTTGTAGTTATTCATCATATCTCTAACAT
GCTTGCTTCTATTCTTCCAATTGAAGAGATTGTACATTGGTCACATGATG
TTGGGGCGAAAGTGCTTGTAGATGCTTGTCAAAGTGTTCCGCACATGGTG
GTTGATGTCCAGGGCCTTGATGCCGATTTTCTTGTTGCCTCTTCTCACAA
GATGTGTGGGCCTACAGGCATTGGATTCTTATTTGGTAAGAGTGATCTCT
TG
back to top