CK739522

Overview
NameCK739522
Unique NameCK739522
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length427
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739522 vs. ExPASy Swiss-Prot
Match: TRXL1_ARATH (Thioredoxin-like 1 OS=Arabidopsis thaliana GN=At1g08570 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.508e-25
Identity = 67/129 (51.94%), Postives = 85/129 (65.89%), Query Frame = 1
Query:   46 SKANLFSYFNQDQHNKSSISVFPKSCAGSCSMKLRSQALRLSS--PLTSDFHGHGVVFQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLSNAGDKLVVVDFFSPGCG 426
            SK +LF     + H     S  P S  G   +K     L+L S  PL S F+G  +VF +++    R SS+   I+AQT LRIG AQ+WWEKGL+ NMRE++SAQ+LV+SL+NAGDKLVVVDFFSPGCG
Sbjct:    6 SKTSLFLGACGNHHRVDDFSFSPVSFGGF-GLKKSFSCLKLKSQKPLRSVFYGKQIVFGDSQDESFRRSSA---ITAQTTLRIGTAQKWWEKGLKDNMREISSAQELVDSLTNAGDKLVVVDFFSPGCG 130          
BLAST of CK739522 vs. ExPASy Swiss-Prot
Match: TRXL7_ARATH (Thioredoxin-like 7, chloroplastic OS=Arabidopsis thaliana GN=At2g33270 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.064e-18
Identity = 50/107 (46.73%), Postives = 61/107 (57.01%), Query Frame = 1
Query:  106 VFPKSCAGSCSMKLRSQALRLSSPLTSDFHGHGVVFQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLSNAGDKLVVVDFFSPGCG 426
            + PKS +  C +  R  +    SP T     +G +    K IP         +  QT L IG+ Q+WWEK L+PNM+ V S QDLV SL NAGDKLVVVDFFSP CG
Sbjct:   27 ISPKSISSLCCISPRLISCNHFSPRTLISGENGNILFSKKKIPA-------FVRCQTSLGIGRNQKWWEKELKPNMKSVTSPQDLVVSLRNAGDKLVVVDFFSPSCG 126          
BLAST of CK739522 vs. ExPASy Swiss-Prot
Match: TRXL3_ARATH (Thioredoxin-like 3, chloroplastic OS=Arabidopsis thaliana GN=At5g61440 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.093e-12
Identity = 45/122 (36.89%), Postives = 65/122 (53.28%), Query Frame = 1
Query:   64 SYFNQDQHNKSSISVFPKSCAGSCSMKLRSQALRLSSPLTSDFHGHGVVFQENKAIPKRGSSSKFSISAQTG-LRIGKAQRWWEKGLQPNMREVASAQDLVESLSNAGDKLVVVDFFSPGCG 426
            S F+Q+  +KS +S F        S+ L+   +      ++DF         N+ +    SSS     A+T  + + +  RWWEK    NM E+ SA  LV+SL NAGD+LVV+DF+SPGCG
Sbjct:   17 SPFSQENQSKSKLSPF-------MSLDLKEHPMA-----SADF--------TNQTLTAFSSSSASPFQAKTSSIGMSRGMRWWEKSTNHNMLEIQSANHLVDSLLNAGDRLVVLDFYSPGCG 118          
The following BLAST results are available for this feature:
BLAST of CK739522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TRXL1_ARATH2.508e-2551.94Thioredoxin-like 1 OS=Arabidopsis thaliana GN=At1g... [more]
TRXL7_ARATH5.064e-1846.73Thioredoxin-like 7, chloroplastic OS=Arabidopsis t... [more]
TRXL3_ARATH1.093e-1236.89Thioredoxin-like 3, chloroplastic OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6360 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739522 ID=CK739522; Name=CK739522; organism=Citrus sinensis; type=EST; length=427bp
GGCTAGCAAGAAAATTTGTTGTGAGAAAACATGGCGGAGTTGTTGAGCAA
AGCGAATCTGTTTTCATATTTTAATCAAGATCAACACAATAAGAGCAGCA
TATCTGTGTTTCCAAAAAGCTGTGCTGGGTCGTGCTCAATGAAATTGAGA
TCCCAGGCTCTGAGGCTCTCTTCACCACTAACCAGTGATTTTCATGGACA
TGGAGTTGTTTTTCAAGAAAATAAAGCCATCCCCAAGAGAGGAAGCTCAT
CCAAGTTCTCCATTAGTGCACAGACTGGCCTTAGAATTGGGAAGGCACAA
AGGTGGTGGGAAAAGGGGCTGCAACCAAACATGAGAGAGGTGGCTTCTGC
ACAAGATTTGGTGGAATCCCTTTCGAATGCTGGGGATAAACTTGTTGTTG
TTGATTTCTTCTCCCCTGGCTGTGGTG
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