CK739523

Overview
NameCK739523
Unique NameCK739523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length402
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.331e-44
Identity = 80/85 (94.12%), Postives = 83/85 (97.65%), Query Frame = 3
Query:    3 NNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 257
            NNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL AHLADPGHAT+FAAF+PK
Sbjct:  186 NNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFSPK 270          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.331e-44
Identity = 80/85 (94.12%), Postives = 83/85 (97.65%), Query Frame = 3
Query:    3 NNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 257
            NNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL AHLADPGHAT+FAAF+PK
Sbjct:  186 NNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFSPK 270          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.442e-15
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 3
Query:   24 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAA 245
            D  YPGG  F+PLG+G    + +KEL+ KEIKNGRLAMLA++G + Q + TG GP  NL+ HLADP +  V  +
Sbjct:  197 DPAYPGGPLFNPLGFGKDE-KSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVLTS 269          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.099e-14
Identity = 42/76 (55.26%), Postives = 51/76 (67.11%), Query Frame = 3
Query:   33 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLIAHLADPGHATVFAAFTPK 257
            YPGG  FDPLG+ S  P K +EL+ KEIKNGRLA+LA++G   Q   Y GTGP++NL  HLADP H  +     PK
Sbjct:  168 YPGGA-FDPLGY-SKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGDVIIPK 241          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.448e-14
Identity = 36/71 (50.70%), Postives = 51/71 (71.83%), Query Frame = 3
Query:   33 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAA 245
            YPGG +F+PLG+G    + +KEL+ KE+KNGRLAMLA++G + Q + TG GP  NL+ H+ADP +  V  +
Sbjct:  202 YPGGPFFNPLGFGKDE-KSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVLTS 271          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.454e-14
Identity = 42/77 (54.55%), Postives = 50/77 (64.94%), Query Frame = 3
Query:   21 TDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 251
            TD  YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP+DNL+ HLADP +   +A  T
Sbjct:  187 TDPLYPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYAT 261          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.303e-14
Identity = 42/76 (55.26%), Postives = 50/76 (65.79%), Query Frame = 3
Query:   33 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLIAHLADPGHATVFAAFTPK 257
            YPGG  FDPLG+ S  P K +EL+ KEIKNGRLAMLA +G   Q   Y GTGP++NL  HLADP H  +     P+
Sbjct:  167 YPGGA-FDPLGF-SKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIPR 240          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.215e-13
Identity = 45/82 (54.88%), Postives = 49/82 (59.76%), Query Frame = 3
Query:   18 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAA---FTP 254
            G D  YPG   FDPLG     P+   EL+ KEIKNGRLAM +  G + Q I TG GPI NL  HLADPG    FAA   FTP
Sbjct:  175 GLDPLYPGES-FDPLGLAD-DPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.707e-13
Identity = 42/77 (54.55%), Postives = 49/77 (63.64%), Query Frame = 3
Query:   21 TDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 251
            TD  YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL  HLADP +   +A  T
Sbjct:  194 TDPIYPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYAT 268          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.707e-13
Identity = 45/89 (50.56%), Postives = 53/89 (59.55%), Query Frame = 3
Query:    6 NKLTGTDVG---YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP--GHATVFAA-FTP 254
            N L G   G   YPGG +FDPLG     P    EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HL DP   +A VFA  F P
Sbjct:  179 NGLDGVGEGNDLYPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAP 266          
The following BLAST results are available for this feature:
BLAST of CK739523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
CB12_SOLLC1.331e-4494.12Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY1.331e-4494.12Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB13_SOLLC6.442e-1552.70Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB11_SOLLC1.099e-1455.26Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB23_PEA2.448e-1450.70Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB27_TOBAC5.454e-1454.55Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB121_HORVU9.303e-1455.26Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB2_CHLMO1.215e-1354.88Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2B_PINSY2.707e-1354.55Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB23_HORVU2.707e-1350.56Chlorophyll a-b binding protein of LHCII type III,... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6361 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739523 ID=CK739523; Name=CK739523; organism=Citrus sinensis; type=EST; length=402bp
CCAACAACAAGCTCACCGGCACCGATGTTGGGTACCCAGGTGGGCTTTGG
TTTGACCCACTTGGCTGGGGATCCGGTTCGCCCGAGAAGGTAAAGGAGCT
GAGGACTAAGGAGATCAAGAATGGAAGATTGGCTATGTTGGCTGTGATGG
GTGCTTGGTTCCAGCACATTTACACCGGCACCGGCCCCATTGACAATCTC
ATTGCTCACCTTGCTGATCCTGGTCATGCCACCGTTTTTGCTGCCTTCAC
CCCCAAGTGAGATGATGACGAACAAAGGGAGAGAAATTTGGGCCAAGTGG
AAGCTTGAGATCAAAGGAATTGGTGTTTCTCTTAGGGAAAGGTTGTATGA
TTAGAACTTGTATTAATTGCCTCTATCTATGTACAAAGACTTGTGTGATC
AC
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