CK739527

Overview
NameCK739527
Unique NameCK739527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length163
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739527 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.547e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 3
Query:    3 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 122
            KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY
Sbjct:  171 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 210          

HSP 2 Score: 22.3274 bits (46), Expect = 2.547e-16
Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 2
Query:  137 DIIRKGKMC 163
            DII+KGKMC
Sbjct:  215 DIIKKGKMC 223          
BLAST of CK739527 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.548e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 3
Query:    3 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 122
            KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY
Sbjct:  162 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 201          

HSP 2 Score: 22.3274 bits (46), Expect = 2.548e-16
Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 2
Query:  137 DIIRKGKMC 163
            DII+KGKMC
Sbjct:  206 DIIKKGKMC 214          
BLAST of CK739527 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.552e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 3
Query:    3 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 122
            KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY
Sbjct:  171 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 210          

HSP 2 Score: 22.3274 bits (46), Expect = 2.552e-16
Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 2
Query:  137 DIIRKGKMC 163
            DII+KGKMC
Sbjct:  215 DIIKKGKMC 223          
BLAST of CK739527 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.555e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 3
Query:    3 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 122
            KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY
Sbjct:  168 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 207          

HSP 2 Score: 22.3274 bits (46), Expect = 2.555e-16
Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 2
Query:  137 DIIRKGKMC 163
            DII+KGKMC
Sbjct:  212 DIIKKGKMC 220          
BLAST of CK739527 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.310e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 3
Query:    3 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 122
            KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY
Sbjct:  175 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 214          

HSP 2 Score: 21.557 bits (44), Expect = 4.310e-16
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 2
Query:  137 DIIRKGKMC 163
            D+I+KGKMC
Sbjct:  219 DLIKKGKMC 227          
BLAST of CK739527 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.566e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 3
Query:    3 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 122
            KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY
Sbjct:  173 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 212          
BLAST of CK739527 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.566e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 3
Query:    3 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 122
            KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY
Sbjct:  161 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 200          
BLAST of CK739527 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.017e-15
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 3
Query:    3 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 122
            KSFQCELVFAK+GINPIMMSAGELESGNAGEPAKLIRQRY
Sbjct:  169 KSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLIRQRY 208          
BLAST of CK739527 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 1.328e-15
Identity = 43/54 (79.63%), Postives = 44/54 (81.48%), Query Frame = 3
Query:    3 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYP*GS-LTLSGREKC 161
            KSFQCELVFAKMGI PIMMSAGELESGNAGEPAKLIRQRY   S L   G+  C
Sbjct:  167 KSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMSC 220          
BLAST of CK739527 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.735e-15
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 3
Query:    3 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 122
            KSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRY
Sbjct:  170 KSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRY 209          
The following BLAST results are available for this feature:
BLAST of CK739527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RCA1_LARTR2.547e-16100.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ2.548e-16100.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR2.552e-16100.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA2.555e-16100.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU4.310e-16100.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU4.566e-16100.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU4.566e-16100.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL1.017e-1597.50Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE1.328e-1579.63Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN1.735e-1597.50Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6365 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739527 ID=CK739527; Name=CK739527; organism=Citrus sinensis; type=EST; length=163bp
GAAAATCATTCCAATGTGAGCTTGTTTTCGCCAAGATGGGCATCAACCCA
ATTATGATGAGTGCCGGAGAATTGGAAAGTGGCAATGCTGGAGAACCCGC
TAAGTTGATCAGGCAGAGGTACCCGTGAGGCAGCCTGACATTATCAGGAA
GGGAAAAATGTGC
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