CK739528

Overview
NameCK739528
Unique NameCK739528
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length379
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739528 vs. ExPASy Swiss-Prot
Match: WRK21_ARATH (Probable WRKY transcription factor 21 OS=Arabidopsis thaliana GN=WRKY21 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 7.505e-43
Identity = 83/127 (65.35%), Postives = 94/127 (74.02%), Query Frame = 1
Query:    1 DGSVANLDGSAFHLIGAPRSSDQSSQQHKRKCSGRGED-GSVKCGSSGRXXXXXXXXXXXXXXXXXPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIV 378
            DGSVAN++G      G P S+DQ+S   KRKC  +G++ GS+KCGSS R                 PAISNK+ADIPPDDYSWRKYGQKPIKGSP+PRGYYKCSSMRGCPARKHVERCLE+P MLIV
Sbjct:  236 DGSVANIEGKNSFHFGVPSSTDQNSLHSKRKCPLKGDEHGSLKCGSSSRCHCAKKRKHRVRRSIRVPAISNKVADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSMRGCPARKHVERCLEDPAMLIV 362          
BLAST of CK739528 vs. ExPASy Swiss-Prot
Match: WRK74_ARATH (Probable WRKY transcription factor 74 OS=Arabidopsis thaliana GN=WRKY74 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.014e-39
Identity = 79/127 (62.20%), Postives = 91/127 (71.65%), Query Frame = 1
Query:    1 DGSVANLDGSAFHLIGAPRSSDQSSQQHKR-KCSGRGEDGSVKCGSSGRXXXXXXXXXXXXXXXXXPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIV 378
            DGSV + D ++FHLIG P+ SD  SQ  +R  CSG     S+KCGS  +                 PAISNK+ADIPPD+YSWRKYGQKPIKGSPHPRGYYKCSS+RGCPARKHVERC+EE +MLIV
Sbjct:  190 DGSVTDYDRNSFHLIGLPQGSDHISQHSRRTSCSG-----SLKCGSKSKCHCSKKRKLRVKRSIKVPAISNKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCVEETSMLIV 311          
BLAST of CK739528 vs. ExPASy Swiss-Prot
Match: WRK39_ARATH (Probable WRKY transcription factor 39 OS=Arabidopsis thaliana GN=WRKY39 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.240e-37
Identity = 78/127 (61.42%), Postives = 89/127 (70.08%), Query Frame = 1
Query:    1 DGSVANLDGSAFHLIGAPRSSDQSSQQHKRK-CSGRGEDGSVKCGSSGRXXXXXXXXXXXXXXXXXPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIV 378
            D SV + D ++FHL G  R SDQ   QH RK CSG     S+KCGS  +                 PAISNK+ADIPPD+YSWRKYGQKPIKGSPHPRGYYKCSS+RGCPARKHVERC++E +MLIV
Sbjct:  193 DASVTDYDRNSFHLTGLSRGSDQ---QHTRKMCSG-----SLKCGSRSKCHCSKKRKLRVKRSIKVPAISNKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCIDETSMLIV 311          
BLAST of CK739528 vs. ExPASy Swiss-Prot
Match: WRKY1_MAIZE (Protein WRKY1 OS=Zea mays PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.189e-34
Identity = 71/132 (53.79%), Postives = 92/132 (69.70%), Query Frame = 1
Query:    1 DGSVANLDGSA----FHLIGAPR--SSDQSSQQHKRKCSGRGEDGSVKCGSSGRXXXXXXXXXXXXXXXXXPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIV 378
            +GS+A+LDGS     F L+   +  S+ +     +R+C+GR EDG+ +C +  R                 PAISNK+ADIP D++SWRKYGQKPIKGSPHPRGYYKCSS+RGCPARKHVERC+++P+MLIV
Sbjct:  251 EGSLASLDGSRTSRPFQLLSGSQTASTPELGLVQRRRCAGR-EDGTGRCATGSRCHCSKKRKLRIRRSIKVPAISNKVADIPADEFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCVDDPSMLIV 381          
BLAST of CK739528 vs. ExPASy Swiss-Prot
Match: WRK17_ARATH (Probable WRKY transcription factor 17 OS=Arabidopsis thaliana GN=WRKY17 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 1.795e-28
Identity = 66/137 (48.18%), Postives = 82/137 (59.85%), Query Frame = 1
Query:    1 DGSVANLDGSAFHLIGAPRSSDQSSQQ-------HKRKC----SGRGEDGSVKCGSSGRXXXXXXXXXXXXXXXXXPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIV 378
            DGSV+   GS+  L  AP     SS +       ++++C       G  G +    +G+                 PA+S K+ADIPPD+YSWRKYGQKPIKGSPHPRGYYKCS+ RGCPARKHVER L++ TMLIV
Sbjct:  158 DGSVSK--GSSIFLAPAPAVPVTSSGKPPLSGLPYRKRCFEHDHSEGFSGKISGSGNGKCHCKKSRKNRMKRTVRVPAVSAKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSTFRGCPARKHVERALDDSTMLIV 292          
BLAST of CK739528 vs. ExPASy Swiss-Prot
Match: WRK11_ARATH (Probable WRKY transcription factor 11 OS=Arabidopsis thaliana GN=WRKY11 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 5.222e-28
Identity = 68/137 (49.64%), Postives = 81/137 (59.12%), Query Frame = 1
Query:    1 DGSVANLDGSAFHLIGAPRSSDQSSQQ-------HKRKC----SGRGEDGSVKCGSSGRXXXXXXXXXXXXXXXXXPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIV 378
            DGSV+N  G  F L  AP     SS +       ++++C          G V   + G+                 PAIS K+ADIPPD+YSWRKYGQKPIKGSPHPRGYYKCS+ RGCPARKHVER L++P MLIV
Sbjct:  162 DGSVSN--GKIF-LASAPLQPVNSSGKPPLAGHPYRKRCLEHEHSESFSGKVSGSAYGKCHCKKSRKNRMKRTVRVPAISAKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSTFRGCPARKHVERALDDPAMLIV 295          
BLAST of CK739528 vs. ExPASy Swiss-Prot
Match: WRK15_ARATH (Probable WRKY transcription factor 15 OS=Arabidopsis thaliana GN=WRKY15 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.820e-28
Identity = 59/104 (56.73%), Postives = 68/104 (65.38%), Query Frame = 1
Query:   73 SQQHKRKCSGRG--EDGSVKCGSSGRXXXXXXXXXXXXXXXXXPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIV 378
            S+  KRKC+             SSGR                 PAIS K++D+PPDDYSWRKYGQKPIKGSPHPRGYYKCSS+RGCPARKHVER  ++ +MLIV
Sbjct:  186 SKSTKRKCNSENLLTGKCASASSSGRCHCSKKRKIKQRRIIRVPAISAKMSDVPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAADDSSMLIV 289          
BLAST of CK739528 vs. ExPASy Swiss-Prot
Match: WRKY7_ARATH (Probable WRKY transcription factor 7 OS=Arabidopsis thaliana GN=WRKY7 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.089e-25
Identity = 49/61 (80.33%), Postives = 57/61 (93.44%), Query Frame = 1
Query:  196 PAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIV 378
            PA+S+K+ADIP D++SWRKYGQKPIKGSPHPRGYYKCSS+RGCPARKHVER L++  MLIV
Sbjct:  270 PAVSSKMADIPSDEFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDAMMLIV 330          
BLAST of CK739528 vs. ExPASy Swiss-Prot
Match: WRK65_ARATH (Probable WRKY transcription factor 65 OS=Arabidopsis thaliana GN=WRKY65 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.899e-18
Identity = 35/51 (68.63%), Postives = 45/51 (88.24%), Query Frame = 1
Query:  226 PPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIV 378
            P D ++WRKYGQKPIKGSP+PRGYY+CSS +GCPARK VER  ++PTM+++
Sbjct:   73 PSDSWAWRKYGQKPIKGSPYPRGYYRCSSTKGCPARKQVERSRDDPTMILI 123          
BLAST of CK739528 vs. ExPASy Swiss-Prot
Match: WRK69_ARATH (Probable WRKY transcription factor 69 OS=Arabidopsis thaliana GN=WRKY69 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.576e-16
Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 1
Query:  226 PPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIV 378
            P D ++WRKYGQKPIKGSP+PRGYY+CSS +GCPARK VER   +P+ L++
Sbjct:   69 PSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPSKLMI 119          
The following BLAST results are available for this feature:
BLAST of CK739528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
WRK21_ARATH7.505e-4365.35Probable WRKY transcription factor 21 OS=Arabidops... [more]
WRK74_ARATH1.014e-3962.20Probable WRKY transcription factor 74 OS=Arabidops... [more]
WRK39_ARATH1.240e-3761.42Probable WRKY transcription factor 39 OS=Arabidops... [more]
WRKY1_MAIZE2.189e-3453.79Protein WRKY1 OS=Zea mays PE=1 SV=1[more]
WRK17_ARATH1.795e-2848.18Probable WRKY transcription factor 17 OS=Arabidops... [more]
WRK11_ARATH5.222e-2849.64Probable WRKY transcription factor 11 OS=Arabidops... [more]
WRK15_ARATH6.820e-2856.73Probable WRKY transcription factor 15 OS=Arabidops... [more]
WRKY7_ARATH1.089e-2580.33Probable WRKY transcription factor 7 OS=Arabidopsi... [more]
WRK65_ARATH4.899e-1868.63Probable WRKY transcription factor 65 OS=Arabidops... [more]
WRK69_ARATH1.576e-1666.67Probable WRKY transcription factor 69 OS=Arabidops... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6366 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739528 ID=CK739528; Name=CK739528; organism=Citrus sinensis; type=EST; length=379bp
GATGGTAGTGTGGCTAATTTGGATGGAAGTGCCTTCCATTTGATTGGGGC
ACCTCGTTCTTCAGATCAGAGTTCACAACAGCACAAGAGGAAGTGCTCTG
GAAGGGGGGAAGATGGGAGTGTGAAATGTGGAAGCAGTGGTAGATGCCAC
TGCTCGAAGAAGAGGAAGCATAGGGTGAAGAAGTCAATCAAGGTACCTGC
TATCAGCAACAAGCTTGCAGATATCCCTCCCGATGATTATTCTTGGAGGA
AGTATGGGCAGAAGCCAATCAAGGGTTCTCCCCATCCTAGGGGATACTAC
AAGTGTAGCAGCATGAGAGGTTGTCCTGCCAGGAAGCATGTGGAGCGGTG
CTTGGAAGAACCAACCATGCTTATTGTTA
back to top