CK739529

Overview
NameCK739529
Unique NameCK739529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISAM1_ARATH (Iron-sulfur assembly protein IscA-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g16710 PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.058e-42
Identity = 80/90 (88.89%), Postives = 88/90 (97.78%), Query Frame = 3
Query:    3 PFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTTSSAEA 272
            PFLRLGVKARGCNGLSYTLNYADEK KFDE+VE+KGV+IL++PKALMHVIGTKMDFVDDKLRSEFVFINPNS+GQCGCGESFMTTS++ A
Sbjct:   43 PFLRLGVKARGCNGLSYTLNYADEKGKFDELVEEKGVRILVEPKALMHVIGTKMDFVDDKLRSEFVFINPNSQGQCGCGESFMTTSTSSA 132          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISAM3_ARATH (Iron-sulfur assembly protein IscA-like 3, mitochondrial OS=Arabidopsis thaliana GN=At2g36260 PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 3.646e-35
Identity = 69/85 (81.18%), Postives = 78/85 (91.76%), Query Frame = 3
Query:    3 PFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTT 257
            PFLRL V+A+GCNGLSY LNYA EK KFDEVVE+KGVKIL+DPKA+MHVIGT+MDFVDDKLRSEFVF+NPN+  +CGCGESF TT
Sbjct:   26 PFLRLAVEAKGCNGLSYVLNYAQEKGKFDEVVEEKGVKILVDPKAVMHVIGTEMDFVDDKLRSEFVFVNPNAT-KCGCGESFTTT 109          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISA1_YEAST (Iron sulfur assembly protein 1 OS=Saccharomyces cerevisiae GN=ISA1 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.420e-25
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFM 251
            +R+  + RGC+GL+Y L Y  E  KFDEVVE  GVKI+ID KAL  +IG++MD++DDKL S+FVF NPNSKG CGCGESFM
Sbjct:  169 IRVSARNRGCSGLTYDLQYITEPGKFDEVVEQDGVKIVIDSKALFSIIGSEMDWIDDKLASKFVFKNPNSKGTCGCGESFM 249          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA1_DICDI (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Dictyostelium discoideum GN=isca1 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.834e-25
Identity = 49/83 (59.04%), Postives = 69/83 (83.13%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDE-VVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMT 254
            LRLG+K RGC+G+SYTL++A +K+KFDE VV DK + I++D KAL+ VIGT+MD++++ ++ EF+FINPN+   CGCGESF T
Sbjct:   43 LRLGIKERGCSGMSYTLDFATQKNKFDETVVADKDINIIVDSKALLSVIGTEMDYIEEPIKKEFIFINPNATNTCGCGESFTT 125          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: Y484_RICPR (Uncharacterized protein RP484 OS=Rickettsia prowazekii GN=RP484 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.939e-24
Identity = 45/80 (56.25%), Postives = 65/80 (81.25%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            +R+G+K+ GC G +Y + YAD K++FDEVVE+KGV+ILIDPK LM+++G++MD+V+   +S+F F NPN K  CGCG+SF
Sbjct:   29 IRVGIKSGGCAGQTYYVEYADNKNQFDEVVEEKGVRILIDPKTLMYILGSEMDYVETNFKSQFTFTNPNEKANCGCGKSF 108          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA1_CHICK (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Gallus gallus GN=ISCA1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.710e-22
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            +++GV+ RGCNGLSYTL Y   K   DE V   GV++ I+ KA + ++GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct:   48 VKVGVRTRGCNGLSYTLEYTKSKGDSDEEVVQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 127          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA1_MACFA (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Macaca fascicularis GN=ISCA1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.623e-22
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            +++GV+ RGCNGLSYTL Y   K   DE V   GV++ I+ KA + ++GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct:   48 VKVGVRTRGCNGLSYTLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 127          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA1_HUMAN (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Homo sapiens GN=ISCA1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.623e-22
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            +++GV+ RGCNGLSYTL Y   K   DE V   GV++ I+ KA + ++GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct:   48 VKVGVRTRGCNGLSYTLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 127          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA1_DANRE (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Danio rerio GN=isca1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.623e-22
Identity = 47/80 (58.75%), Postives = 61/80 (76.25%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            L++GV+ RGCNGL+YTL+Y   K + DE V   GV++ I+ KA + ++GT+MDFV+ KL SEFVF NPN KG CGCGESF
Sbjct:   48 LKVGVRTRGCNGLTYTLDYTKNKEQSDEEVLQDGVRVFIEKKAQLTLLGTEMDFVETKLSSEFVFNNPNIKGTCGCGESF 127          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA1_BOVIN (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Bos taurus GN=ISCA1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.623e-22
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            +++GV+ RGCNGLSYTL Y   K   DE V   GV++ I+ KA + ++GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct:   48 VKVGVRTRGCNGLSYTLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 127          
The following BLAST results are available for this feature:
BLAST of CK739529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
ISAM1_ARATH1.058e-4288.89Iron-sulfur assembly protein IscA-like 1, mitochon... [more]
ISAM3_ARATH3.646e-3581.18Iron-sulfur assembly protein IscA-like 3, mitochon... [more]
ISA1_YEAST3.420e-2564.20Iron sulfur assembly protein 1 OS=Saccharomyces ce... [more]
ISCA1_DICDI5.834e-2559.04Iron-sulfur cluster assembly 1 homolog, mitochondr... [more]
Y484_RICPR4.939e-2456.25Uncharacterized protein RP484 OS=Rickettsia prowaz... [more]
ISCA1_CHICK2.710e-2258.75Iron-sulfur cluster assembly 1 homolog, mitochondr... [more]
ISCA1_MACFA4.623e-2258.75Iron-sulfur cluster assembly 1 homolog, mitochondr... [more]
ISCA1_HUMAN4.623e-2258.75Iron-sulfur cluster assembly 1 homolog, mitochondr... [more]
ISCA1_DANRE4.623e-2258.75Iron-sulfur cluster assembly 1 homolog, mitochondr... [more]
ISCA1_BOVIN4.623e-2258.75Iron-sulfur cluster assembly 1 homolog, mitochondr... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6367 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739529 ID=CK739529; Name=CK739529; organism=Citrus sinensis; type=EST; length=532bp
GTCCTTTCCTCCGTCTTGGCGTTAAGGCTCGCGGCTGCAACGGCTTATCC
TACACCCTCAATTATGCAGACGAGAAATCAAAGTTCGATGAGGTGGTTGA
GGACAAGGGCGTTAAGATATTAATTGATCCGAAGGCACTGATGCATGTTA
TAGGAACCAAGATGGATTTCGTAGATGACAAACTCAGATCTGAGTTTGTA
TTCATCAACCCCAACTCGAAAGGGCAGTGTGGTTGTGGAGAGTCCTTTAT
GACAACAAGCAGTGCGGAAGCTGCTAAGCGAGGTCGTAGTTAATGATTAT
CATCTTAACTTCATTTTATCTCGTGGCGATCTTGCATATTTCATGCTGTC
CAAGCAACCTTTTGATTCCCACTTACACTGTTACTTATGTACGTAGACTA
TAACATAGATCAGAATTGTGGCTTACGCTCATGTAAATAATGGTGATAAT
AGTATGGTAATTCACTGTGGTTTGGTTTAAACATCAAAATCTTGATTCAA
GTATTTAGAGTTTGCCTTTTCCAAACTCTATT
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