CK739530

Overview
NameCK739530
Unique NameCK739530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length379
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739530 vs. ExPASy Swiss-Prot
Match: PFD2_ARATH (Probable prefoldin subunit 2 OS=Arabidopsis thaliana GN=At3g22480 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.230e-36
Identity = 73/101 (72.28%), Postives = 86/101 (85.15%), Query Frame = 3
Query:   75 REPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDF 377
            REP NEQ V NMY   RSEL+QIYS IT+LEM+ SEHSLVINAI+PLD SRKC+RMIGGVLVERTI EVLPAVQRNK+G+EEV+ +L E L  KKK++++F
Sbjct:   11 REPPNEQAVLNMYEGKRSELSQIYSNITDLEMQVSEHSLVINAIQPLDQSRKCFRMIGGVLVERTIKEVLPAVQRNKDGLEEVVRKLYETLEKKKKDLTEF 111          
BLAST of CK739530 vs. ExPASy Swiss-Prot
Match: PFD2_DICDI (Probable prefoldin subunit 2 OS=Dictyostelium discoideum GN=pfdn2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.745e-23
Identity = 47/104 (45.19%), Postives = 79/104 (75.96%), Query Frame = 3
Query:   66 TERREPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDF 377
            +++++ + E  +   Y  ++S+  QI S+I+E E +  E+ LVINAI+ L+ +RKC+RM+GGVLVERT+ EVLP +++N++GI+EV+ +L+E L+ K KE++DF
Sbjct:    2 SQQKQQLTENQIIEHYKDLKSQQQQIISRISEFESDVGEYGLVINAIQNLESNRKCFRMVGGVLVERTVGEVLPQIKQNRDGIKEVVKKLDENLSIKTKELNDF 105          
BLAST of CK739530 vs. ExPASy Swiss-Prot
Match: PFD2_HUMAN (Prefoldin subunit 2 OS=Homo sapiens GN=PFDN2 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.631e-23
Identity = 51/96 (53.12%), Postives = 72/96 (75.00%), Query Frame = 3
Query:   90 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDF 377
            EQ++A  +  +R E   + SK  ELEME +EHSLVI+ +K +D +RKCYRM+GGVLVERT+ EVLPA++ NKE I+++I  L + L AK KE+++F
Sbjct:   24 EQVIAG-FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERTVKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEF 118          
BLAST of CK739530 vs. ExPASy Swiss-Prot
Match: PFD2_BOVIN (Prefoldin subunit 2 OS=Bos taurus GN=PFDN2 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.631e-23
Identity = 51/96 (53.12%), Postives = 72/96 (75.00%), Query Frame = 3
Query:   90 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDF 377
            EQ++A  +  +R E   + SK  ELEME +EHSLVI+ +K +D +RKCYRM+GGVLVERT+ EVLPA++ NKE I+++I  L + L AK KE+++F
Sbjct:   24 EQVIAG-FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERTVKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEF 118          
BLAST of CK739530 vs. ExPASy Swiss-Prot
Match: PFD2_RAT (Prefoldin subunit 2 OS=Rattus norvegicus GN=Pfdn2 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.660e-23
Identity = 51/96 (53.12%), Postives = 73/96 (76.04%), Query Frame = 3
Query:   90 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDF 377
            EQ++A  +  +R E   + SK  ELEME +EHSLVI+ +K +D +RKCYRM+GGVLVERT+ EVLPA++ NKE I+++I  L++ L AK KE+++F
Sbjct:   24 EQVIAG-FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERTVKEVLPALEGNKEQIQKIIETLSQQLQAKGKELNEF 118          
BLAST of CK739530 vs. ExPASy Swiss-Prot
Match: PFD2_MOUSE (Prefoldin subunit 2 OS=Mus musculus GN=Pfdn2 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 8.660e-23
Identity = 51/96 (53.12%), Postives = 73/96 (76.04%), Query Frame = 3
Query:   90 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDF 377
            EQ++A  +  +R E   + SK  ELEME +EHSLVI+ +K +D +RKCYRM+GGVLVERT+ EVLPA++ NKE I+++I  L++ L AK KE+++F
Sbjct:   24 EQVIAG-FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERTVKEVLPALEGNKEQIQKIIETLSQQLQAKGKELNEF 118          
BLAST of CK739530 vs. ExPASy Swiss-Prot
Match: PFD2_SCHPO (Probable prefoldin subunit 2 OS=Schizosaccharomyces pombe GN=SPAC227.10 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.339e-15
Identity = 39/100 (39.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:   78 EPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDF 377
            +P  +QI+   Y S +S L QI  KI +LE +A EH LV++ +  +D +R+C+RMI GVLVERT+  V+P ++  +EGI+  +  L +     + E   F
Sbjct:    4 QPSRQQILQTQYNSYKSRLQQIAQKIVDLETDADEHKLVMDTLNSMDNNRRCFRMIHGVLVERTVGTVVPILKTTQEGIQTAMNGLLDQYKQLEAEFQKF 103          
BLAST of CK739530 vs. ExPASy Swiss-Prot
Match: PFD2_DROME (Probable prefoldin subunit 2 OS=Drosophila melanogaster GN=l(3)01239 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.089e-15
Identity = 38/105 (36.19%), Postives = 62/105 (59.05%), Query Frame = 3
Query:   66 TERREP-VNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDF 377
            TE  +P ++++ +   +  +R+E   + + +  LEM+  EH  VI  ++  DP RKC+R IGGVL ERT+ EVLP +  NK+ I + I  +   L+ K  E++ F
Sbjct:    3 TESAKPALSQEAIVAQFQQLRNEQRNLVNSLNTLEMDLREHKTVIETLEAADPERKCFRQIGGVLCERTVKEVLPQLVENKDFIAKTIQMVTNDLSKKGSELNKF 107          
BLAST of CK739530 vs. ExPASy Swiss-Prot
Match: PFD2_YEAST (Prefoldin subunit 2 OS=Saccharomyces cerevisiae GN=GIM4 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.637e-13
Identity = 35/85 (41.18%), Postives = 51/85 (60.00%), Query Frame = 3
Query:  111 YTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKE 365
            Y   +  L ++ +KI EL  +  EH++VI  +K  +P+RKCYRMIGG LVE  +   LP ++  KE IE  I+++ E L    KE
Sbjct:   12 YNEYKQILEELQTKIIELGHDKDEHTIVIKTLKDAEPTRKCYRMIGGALVESDVQTSLPILETKKENIEGTISKMKETLIQTAKE 96          
BLAST of CK739530 vs. ExPASy Swiss-Prot
Match: PFD2_CAEEL (Probable prefoldin subunit 2 OS=Caenorhabditis elegans GN=tag-355 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.614e-11
Identity = 35/106 (33.02%), Postives = 59/106 (55.66%), Query Frame = 3
Query:   54 AEPETERREPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEIS 371
            AE E +R+       V   + ++R +   I +++T +E E  E   V+  IK L+P +KC+R+I   LVE T+ +V+P +Q N   +  V  +LN+ L  K KE++
Sbjct:   12 AEQEEQRK-------VVEKFKALRDQQQDIAAEVTRIEEERREFGRVLEVIKDLEPDQKCFRLISDTLVEYTVKDVIPDLQNNIANLTIVSKQLNDQLVEKGKELN 110          
The following BLAST results are available for this feature:
BLAST of CK739530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PFD2_ARATH5.230e-3672.28Probable prefoldin subunit 2 OS=Arabidopsis thalia... [more]
PFD2_DICDI1.745e-2345.19Probable prefoldin subunit 2 OS=Dictyostelium disc... [more]
PFD2_HUMAN6.631e-2353.13Prefoldin subunit 2 OS=Homo sapiens GN=PFDN2 PE=1 ... [more]
PFD2_BOVIN6.631e-2353.13Prefoldin subunit 2 OS=Bos taurus GN=PFDN2 PE=2 SV... [more]
PFD2_RAT8.660e-2353.13Prefoldin subunit 2 OS=Rattus norvegicus GN=Pfdn2 ... [more]
PFD2_MOUSE8.660e-2353.13Prefoldin subunit 2 OS=Mus musculus GN=Pfdn2 PE=2 ... [more]
PFD2_SCHPO1.339e-1539.00Probable prefoldin subunit 2 OS=Schizosaccharomyce... [more]
PFD2_DROME5.089e-1536.19Probable prefoldin subunit 2 OS=Drosophila melanog... [more]
PFD2_YEAST1.637e-1341.18Prefoldin subunit 2 OS=Saccharomyces cerevisiae GN... [more]
PFD2_CAEEL2.614e-1133.02Probable prefoldin subunit 2 OS=Caenorhabditis ele... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6368 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739530 ID=CK739530; Name=CK739530; organism=Citrus sinensis; type=EST; length=379bp
CCTAGGGAGGGTTCACGCACTTAAATTAGATTCAAGAATCAGAATCATGG
CTGGCAGAGCCTGAAACTGAGCGCAGGGAACCGGTAAATGAACAAATAGT
GGCAAATATGTACACATCTATGAGATCTGAACTAAATCAAATCTACTCGA
AAATTACCGAACTGGAGATGGAGGCAAGTGAGCACTCATTGGTTATTAAT
GCTATTAAGCCACTTGACCCTTCTAGAAAGTGCTACCGGATGATTGGAGG
TGTGCTGGTGGAGAGAACAATCAGTGAAGTCCTTCCTGCTGTGCAACGCA
ATAAAGAGGGGATAGAGGAGGTAATTGCAAGGCTCAACGAGGCCTTAGCA
GCGAAGAAGAAAGAAATTTCCGACTTTGA
back to top