CK739536

Overview
NameCK739536
Unique NameCK739536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length427
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739536 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.514e-38
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 1
Query:    1 VFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 228
            VFHPN+NSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK+D+AKYESTARSWTQKYAMG
Sbjct:   73 VFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148          
BLAST of CK739536 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.583e-38
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 1
Query:    1 VFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 228
            VFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK+D+AKYE+TARSWTQKYAMG
Sbjct:   73 VFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 148          
BLAST of CK739536 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.583e-38
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1
Query:    1 VFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 228
            VFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK+DK KYESTARSWTQKYAMG
Sbjct:   73 VFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARSWTQKYAMG 148          
BLAST of CK739536 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.754e-38
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1
Query:    1 VFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 228
            VFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK+DK KYESTAR+WTQKYAMG
Sbjct:   73 VFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARTWTQKYAMG 148          
BLAST of CK739536 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.754e-38
Identity = 72/76 (94.74%), Postives = 76/76 (100.00%), Query Frame = 1
Query:    1 VFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 228
            VFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK+D+AKYE+TAR+WTQKYAMG
Sbjct:   73 VFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQKYAMG 148          
BLAST of CK739536 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 5.754e-38
Identity = 72/76 (94.74%), Postives = 76/76 (100.00%), Query Frame = 1
Query:    1 VFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 228
            V+HPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK+D++KYESTARSWTQKYAMG
Sbjct:   73 VYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQKYAMG 148          
BLAST of CK739536 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 8.309e-37
Identity = 69/76 (90.79%), Postives = 75/76 (98.68%), Query Frame = 1
Query:    1 VFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 228
            V+HPNINSNGSICLDILKEQWSPALT+SKVLLSICSLLTDPNPDDPLVPEIAH+YK+D+ KYESTA+SWTQKYAMG
Sbjct:   73 VYHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDRVKYESTAQSWTQKYAMG 148          
BLAST of CK739536 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.673e-35
Identity = 67/75 (89.33%), Postives = 73/75 (97.33%), Query Frame = 1
Query:    1 VFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 225
            VFHPNINSNG+ICLDILK+QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAH+YK+DK KYE+ ARSWTQKYA+
Sbjct:   73 VFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYEAMARSWTQKYAL 147          
BLAST of CK739536 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.467e-33
Identity = 61/75 (81.33%), Postives = 74/75 (98.67%), Query Frame = 1
Query:    1 VFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 225
            ++HPNINSNGSICLDIL++QWSPALTISKVLLSICS+LTDPNPD+PLVPEIAH+YK+D+A+YE+TAR WT+KYA+
Sbjct:   73 IYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATAREWTRKYAI 147          
BLAST of CK739536 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.915e-33
Identity = 65/76 (85.53%), Postives = 71/76 (93.42%), Query Frame = 1
Query:    1 VFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 228
            V+HPNI+S GSICLDILKEQWSPA T SKVLLSICSLLTDPNP+DPLVPEIAH+YK DK+KYESTA+ WTQKYAMG
Sbjct:   74 VYHPNIDSKGSICLDILKEQWSPAPTTSKVLLSICSLLTDPNPNDPLVPEIAHLYKVDKSKYESTAQKWTQKYAMG 149          
The following BLAST results are available for this feature:
BLAST of CK739536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
UBC28_ARATH1.514e-3896.05Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC4_SOLLC2.583e-3896.05Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC10_ARATH2.583e-3897.37Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC9_ARATH5.754e-3896.05SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC8_ARATH5.754e-3894.74Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC11_ARATH5.754e-3894.74Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC30_ARATH8.309e-3790.79Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC29_ARATH2.673e-3589.33Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC1_COLGL1.467e-3381.33Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UBC12_ARATH1.915e-3385.53Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6374 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739536 ID=CK739536; Name=CK739536; organism=Citrus sinensis; type=EST; length=427bp
GTCTTCCACCCGAACATCAACAGCAATGGAAGCATCTGTCTTGATATCCT
TAAAGAACAGTGGAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTCTA
TCTGCTCCTTGCTTACTGATCCAAATCCCGACGACCCTCTTGTACCGGAG
ATTGCCCACATGTACAAGTCCGACAAGGCCAAATATGAATCCACGGCCAG
GAGCTGGACACAGAAGTATGCCATGGGATGAAGGTTGTTAGGATATTGCA
GAAAAAGGAGCATTTATTGAAATATGTTGTGTGTGTTGTCTATCTATTTT
CTTTAACTTGCTTTGGGGAGGGCAGACGTTGGTGTTTTAGAATGGTGTTG
GGAGGAGTTGCAAGGGCGGGACGTTTTTATGTTAATGTTGAATGTTTGTG
TTTGAAGCTTCTTCGATGGAACGTAGT
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