CK739537

Overview
NameCK739537
Unique NameCK739537
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK739537 vs. ExPASy Swiss-Prot
Match: FB140_ARATH (F-box protein At3g12350 OS=Arabidopsis thaliana GN=At3g12350 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.319e-15
Identity = 41/77 (53.25%), Postives = 52/77 (67.53%), Query Frame = 3 
Query:   12 PWRETEDEVVSHIMYINSSYDLVVRDSSGISANPPQGEGRIWQYKDGTFGFGFFWDNFIIDLKRM-VEDGCLLDAVE 239
            P+ E  + VVS ++Y+ SS DLV+    G      +GEGR+W Y +GTFGFGF  D FIIDLKR+ +EDGCL D VE
Sbjct:  343 PFAEVHENVVSGMLYMKSSCDLVLPGEPGNGIGFLRGEGRVWLYDNGTFGFGFLRDQFIIDLKRVALEDGCLADEVE 419
The following BLAST results are available for this feature:
BLAST of CK739537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FB140_ARATH1.319e-1553.25F-box protein At3g12350 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6375 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739537 ID=CK739537; Name=CK739537; organism=Citrus sinensis; type=EST; length=391bp
ATTGCCAACACCCATGGAGAGAGACAGAAGATGAGGTTGTCTCTCACATA
ATGTACATAAACTCAAGTTATGATCTAGTAGTTCGAGATTCATCAGGAAT
CTCTGCAAACCCTCCACAAGGAGAGGGGAGGATTTGGCAGTACAAGGATG
GGACATTTGGATTTGGGTTTTTTTGGGATAATTTTATCATAGACCTCAAG
CGTATGGTTGAAGATGGCTGTCTTCTTGACGCAGTGGAGGTTTGATATGA
TTGAATGATATCCTTGTTTGGGAATCATCTGTGTACAAAATAAATCTGTT
GCTGGATGCCAGTTTTGGATTGCAGCACTGTGTACCATGTCCTCTTGTGG
ATATCATAAATTTATTGTTAATCATTAAAAAAAAAAAAAAA
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