CK739543

Overview
NameCK739543
Unique NameCK739543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length352
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_PEA (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Pisum sativum GN=GDCSP PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.421e-33
Identity = 60/71 (84.51%), Postives = 65/71 (91.55%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 213
            +E G AD+HNNVLKGAPHPPSLLM D WTKPYSREYAA+PA+WLR AKFWP TGRVDNVYGDRNL+CTLLP
Sbjct:  974 VEKGNADVHNNVLKGAPHPPSLLMADAWTKPYSREYAAFPAAWLRGAKFWPTTGRVDNVYGDRNLVCTLLP 1044          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_SOLTU (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Solanum tuberosum GN=GDCSP PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.569e-32
Identity = 61/71 (85.92%), Postives = 63/71 (88.73%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 213
            IE G  DI+NNVLKGAPHPPS+LM D WTKPYSREYAAYPA WLR AKFWP TGRVDNVYGDRNLICTLLP
Sbjct:  953 IEKGNVDINNNVLKGAPHPPSMLMADAWTKPYSREYAAYPAPWLRSAKFWPTTGRVDNVYGDRNLICTLLP 1023          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP2_ARATH (Glycine dehydrogenase [decarboxylating] 2, mitochondrial OS=Arabidopsis thaliana GN=At4g33010 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 2.959e-31
Identity = 58/71 (81.69%), Postives = 62/71 (87.32%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 213
            IE G AD+ NNVLKGAPHPPSLLM DTW KPYSREYAA+PA WLR +KFWP TGRVDNVYGDR L+CTLLP
Sbjct:  956 IEKGNADVQNNVLKGAPHPPSLLMADTWKKPYSREYAAFPAPWLRSSKFWPTTGRVDNVYGDRKLVCTLLP 1026          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP1_ARATH (Glycine dehydrogenase [decarboxylating] 1, mitochondrial OS=Arabidopsis thaliana GN=GDCSP PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.125e-30
Identity = 58/71 (81.69%), Postives = 62/71 (87.32%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 213
            IE G AD +NNVLKGAPHPPSLLM DTW KPYSREYAA+PA WLR +KFWP TGRVDNVYGDRNL+CTL P
Sbjct:  962 IEKGNADPNNNVLKGAPHPPSLLMADTWKKPYSREYAAFPAPWLRSSKFWPTTGRVDNVYGDRNLVCTLQP 1032          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSPA_FLAPR (Glycine dehydrogenase [decarboxylating] A, mitochondrial OS=Flaveria pringlei GN=GDCSPA PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.581e-30
Identity = 57/71 (80.28%), Postives = 60/71 (84.51%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 213
            IE G  D++NNV+KGAPHPP LLM D WTKPYSREYAAYPA WLR AKFWP T RVDNVYGDRNLICTL P
Sbjct:  955 IEKGNVDLNNNVIKGAPHPPQLLMADKWTKPYSREYAAYPAPWLRAAKFWPTTCRVDNVYGDRNLICTLQP 1025          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_FLAAN (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria anomala GN=GDCSP PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.520e-30
Identity = 57/71 (80.28%), Postives = 59/71 (83.10%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 213
            IE G  D +NNV+KGAPHPP LLM D WTKPYSREYAAYPA WLR AKFWP T RVDNVYGDRNLICTL P
Sbjct:  952 IEKGNVDFNNNVIKGAPHPPQLLMADKWTKPYSREYAAYPAPWLRAAKFWPTTCRVDNVYGDRNLICTLQP 1022          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSPB_FLAPR (Glycine dehydrogenase [decarboxylating] B, mitochondrial OS=Flaveria pringlei GN=GDCSPB PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.520e-30
Identity = 57/71 (80.28%), Postives = 59/71 (83.10%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 213
            IE G  D +NNV+KGAPHPP LLM D WTKPYSREYAAYPA WLR AKFWP T RVDNVYGDRNLICTL P
Sbjct:  952 IEKGNVDFNNNVIKGAPHPPQLLMADKWTKPYSREYAAYPAPWLRAAKFWPTTCRVDNVYGDRNLICTLQP 1022          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_FLATR (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria trinervia GN=GDCSPA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.243e-29
Identity = 57/71 (80.28%), Postives = 59/71 (83.10%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 213
            IE G  D +NNV+KGAPHPP LLM D WTKPYSREYAAYPA WLR AKFWP T RVDNVYGDRNLICTL P
Sbjct:  952 IEKGTVDFNNNVIKGAPHPPQLLMADKWTKPYSREYAAYPAPWLRAAKFWPTTCRVDNVYGDRNLICTLQP 1022          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_BDEBA (Glycine dehydrogenase [decarboxylating] OS=Bdellovibrio bacteriovorus GN=gcvP PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.009e-20
Identity = 42/68 (61.76%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICT 204
            +E GK D  NN LK APH   +LM   W  PYSRE A YP  WLR  KFWP  GRVDN YGDRNLIC+
Sbjct:  882 VETGKMDKENNALKNAPHTAQMLMKPEWNHPYSREEAVYPVEWLRGNKFWPVVGRVDNAYGDRNLICS 949          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_ANAVT (Glycine dehydrogenase [decarboxylating] OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gcvP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.523e-19
Identity = 41/71 (57.75%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 213
            IE GK D HNN+LK APH    L+   W  PYSRE AAYP SW R  KFWP+ GR+D  +GDRN +C+ LP
Sbjct:  899 IEAGKMDTHNNLLKNAPHTIESLIVGEWLHPYSREQAAYPVSWTREYKFWPSVGRIDAAFGDRNFVCSCLP 969          
The following BLAST results are available for this feature:
BLAST of CK739543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
GCSP_PEA2.421e-3384.51Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_SOLTU1.569e-3285.92Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP2_ARATH2.959e-3181.69Glycine dehydrogenase [decarboxylating] 2, mitocho... [more]
GCSP1_ARATH1.125e-3081.69Glycine dehydrogenase [decarboxylating] 1, mitocho... [more]
GCSPA_FLAPR5.581e-3080.28Glycine dehydrogenase [decarboxylating] A, mitocho... [more]
GCSP_FLAAN9.520e-3080.28Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSPB_FLAPR9.520e-3080.28Glycine dehydrogenase [decarboxylating] B, mitocho... [more]
GCSP_FLATR1.243e-2980.28Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_BDEBA4.009e-2061.76Glycine dehydrogenase [decarboxylating] OS=Bdellov... [more]
GCSP_ANAVT1.523e-1957.75Glycine dehydrogenase [decarboxylating] OS=Anabaen... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6381 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739543 ID=CK739543; Name=CK739543; organism=Citrus sinensis; type=EST; length=352bp
ATTGAAAATGGGAAGGCAGATATCCACAACAATGTCCTGAAGGGGGCGCC
TCATCCACCATCTTTGCTCATGGGAGATACATGGACTAAACCATACTCTC
GAGAATATGCAGCCTATCCTGCTTCCTGGCTCCGGTTTGCTAAGTTCTGG
CCTGCTACAGGACGCGTTGACAATGTGTATGGTGACCGCAACCTCATCTG
CACCCTTCTTCCAGCTGCACAAGTTGCTGAGGAGCAGGCTGCAGCCACTG
CTTAGAGTTGCCATCAACATGCCCCCTGGTGCAAGGTTTCTTCAGGAGCA
TGGAAAAATTTGGAATCATCAACACTTCCTGATTTGATTGTATATATGAA
TA
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