CK739544

Overview
NameCK739544
Unique NameCK739544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length350
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739544 vs. ExPASy Swiss-Prot
Match: TBA1_ORYSJ (Tubulin alpha-1 chain OS=Oryza sativa subsp. japonica GN=TUBA1 PE=1 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 3.978e-60
Identity = 108/117 (92.31%), Postives = 114/117 (97.44%), Query Frame = 3 
Query:    3 TIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDDN-EGEDY 350
            TIKTKR VQFVDWCPTGFKCGINYQPP+VVPGGDLA+VQRAVCMISNNTAVAEVFSRIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA+G DD+N +GEDY
Sbjct:  334 TIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGADDENDDGEDY 450
[Close]
BLAST of CK739544 vs. ExPASy Swiss-Prot
Match: TBA3_ARATH (Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thaliana GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 5.195e-60
Identity = 109/117 (93.16%), Postives = 114/117 (97.44%), Query Frame = 3 
Query:    3 TIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDD-DNEGEDY 350
            TIKTKR VQFVDWCPTGFKCGINYQPPTVVPGGDLA+VQRAVCMISNNTAVAEVFSRIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA+G DD ++EGEDY
Sbjct:  334 TIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGGDDEEDEGEDY 450
[Close]
BLAST of CK739544 vs. ExPASy Swiss-Prot
Match: TBA3_ELEIN (Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 6.785e-60
Identity = 108/117 (92.31%), Postives = 114/117 (97.44%), Query Frame = 3 
Query:    3 TIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDD-NEGEDY 350
            TIKTKR VQFVDWCPTGFKCGINYQPP+VVPGGDLA+VQRAVCMISNNTAVAEVFSRIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA+G DD+ +EGEDY
Sbjct:  334 TIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGADDEGDEGEDY 450
[Close]
BLAST of CK739544 vs. ExPASy Swiss-Prot
Match: TBA6_MAIZE (Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 1.512e-59
Identity = 107/117 (91.45%), Postives = 114/117 (97.44%), Query Frame = 3 
Query:    3 TIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDD-NEGEDY 350
            TIKTKR VQFVDWCPTGFKCGINYQPP+VVPGGDLA+VQRAVCMISNNTAVAEVFSRIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA+G DD+ +EG+DY
Sbjct:  334 TIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGADDEGDEGDDY 450
[Close]
BLAST of CK739544 vs. ExPASy Swiss-Prot
Match: TBA5_MAIZE (Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 1.512e-59
Identity = 107/117 (91.45%), Postives = 114/117 (97.44%), Query Frame = 3 
Query:    3 TIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDD-NEGEDY 350
            TIKTKR VQFVDWCPTGFKCGINYQPP+VVPGGDLA+VQRAVCMISNNTAVAEVFSRIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA+G DD+ +EG+DY
Sbjct:  334 TIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGADDEGDEGDDY 450
[Close]
BLAST of CK739544 vs. ExPASy Swiss-Prot
Match: TBA1_HORVU (Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 1.512e-59
Identity = 107/117 (91.45%), Postives = 114/117 (97.44%), Query Frame = 3 
Query:    3 TIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDD-NEGEDY 350
            TIKTKR VQFVDWCPTGFKCGINYQPP+VVPGGDLA+VQRAVCMISNNTAVAEVFSRIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA+G DD+ +EG+DY
Sbjct:  334 TIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGADDEGDEGDDY 450
[Close]
BLAST of CK739544 vs. ExPASy Swiss-Prot
Match: TBA6_ARATH (Tubulin alpha-6 chain OS=Arabidopsis thaliana GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 5.744e-59
Identity = 106/117 (90.60%), Postives = 114/117 (97.44%), Query Frame = 3 
Query:    3 TIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDD-DNEGEDY 350
            TIKTKR +QFVDWCPTGFKCGINYQPPTVVPGGDLA+VQRAVCMISN+T+VAEVFSRIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA+G DD D+EGE+Y
Sbjct:  334 TIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGGDDEDDEGEEY 450
[Close]
BLAST of CK739544 vs. ExPASy Swiss-Prot
Match: TBA2_ARATH (Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thaliana GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 5.744e-59
Identity = 106/117 (90.60%), Postives = 114/117 (97.44%), Query Frame = 3 
Query:    3 TIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDD-DNEGEDY 350
            TIKTKR +QFVDWCPTGFKCGINYQPPTVVPGGDLA+VQRAVCMISN+T+VAEVFSRIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA+G DD D+EGE+Y
Sbjct:  334 TIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGGDDEDDEGEEY 450
[Close]
BLAST of CK739544 vs. ExPASy Swiss-Prot
Match: TBA1_ARATH (Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 4.862e-58
Identity = 104/116 (89.66%), Postives = 110/116 (94.83%), Query Frame = 3 
Query:    6 IKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGV-DDDNEGEDY 350
            IK KR +QFVDWCPTGFKCGINYQPP+VVPGGDLA+VQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG +G  DDD EG++Y
Sbjct:  335 IKAKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGGEGAEDDDEEGDEY 450
[Close]
BLAST of CK739544 vs. ExPASy Swiss-Prot
Match: TBA_PRUDU (Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 8.294e-58
Identity = 103/117 (88.03%), Postives = 113/117 (96.58%), Query Frame = 3 
Query:    3 TIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVD-DDNEGEDY 350
            TIKTKR +QFVDWCPTGFKCGINYQPPTVVPGGDLA+VQRAVCMISN+T+VAEVFSRIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA+  + +D+EG+DY
Sbjct:  334 TIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGEDDEGDDY 450
The following BLAST results are available for this feature:
BLAST of CK739544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
TBA1_ORYSJ3.978e-6092.31Tubulin alpha-1 chain OS=Oryza sativa subsp. japon... [more]
TBA3_ARATH5.195e-6093.16Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thali... [more]
TBA3_ELEIN6.785e-6092.31Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 ... [more]
TBA6_MAIZE1.512e-5991.45Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV... [more]
TBA5_MAIZE1.512e-5991.45Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV... [more]
TBA1_HORVU1.512e-5991.45Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 ... [more]
TBA6_ARATH5.744e-5990.60Tubulin alpha-6 chain OS=Arabidopsis thaliana GN=T... [more]
TBA2_ARATH5.744e-5990.60Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thali... [more]
TBA1_ARATH4.862e-5889.66Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=T... [more]
TBA_PRUDU8.294e-5888.03Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6382 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739544 ID=CK739544; Name=CK739544; organism=Citrus sinensis; type=EST; length=350bp
CCACCATCAAGACGAAGCGGGCAGTTCAGTTTGTTGATTGGTGTCCAACT
GGTTTCAAATGTGGTATCAACTACCAGCCACCGACAGTGGTACCAGGGGG
TGATCTTGCTAGAGTTCAGCGTGCAGTTTGTATGATAAGCAACAACACAG
CTGTGGCTGAGGTTTTCTCCCGAATTGACCATAAATTTGATCTCATGTAT
TCCAAGCGAGCATTCGTTCACTGGTATGTAGGTGAGGGCATGGAGGAAGG
TGAATTCTCAGAAGCTCGAGAAGACCTTGCTGCTCTTGAGAAAGACTATG
AGGAAGTTGGGGCAGACGGTGTTGATGATGACAATGAGGGAGAAGATTAC
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