CK739545

Overview
NameCK739545
Unique NameCK739545
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length231
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739545 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.734e-24
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 1
Query:  121 LQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAI 231
            ++PTP QPYTEVFG+QRFRECELIHGRWAMLGTLGAI
Sbjct:  120 IKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAI 156          

HSP 2 Score: 53.1434 bits (126), Expect = 4.734e-24
Identity = 23/29 (79.31%), Postives = 24/29 (82.76%), Query Frame = 2
Query:    2 PLGLGKPTEYLQYDFDSLDQNLAKNDVGE 88
            P GLGKP EYLQYDFD LDQNLAKN  G+
Sbjct:   81 PFGLGKPAEYLQYDFDGLDQNLAKNVAGD 109          
BLAST of CK739545 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.016e-21
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 1
Query:  130 TPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAI 231
            TP QPY+EVFGLQRFRECELIHGRWAML TLGAI
Sbjct:  119 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGAI 152          

HSP 2 Score: 51.2174 bits (121), Expect = 2.016e-21
Identity = 23/29 (79.31%), Postives = 24/29 (82.76%), Query Frame = 2
Query:    2 PLGLGKPTEYLQYDFDSLDQNLAKNDVGE 88
            P GLGKP EYLQ+D DSLDQNLAKN  GE
Sbjct:   77 PFGLGKPAEYLQFDLDSLDQNLAKNLYGE 105          
BLAST of CK739545 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.766e-21
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 1
Query:  130 TPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAI 231
            TP QPY+EVFG+QRFRECELIHGRWAML TLGA+
Sbjct:  122 TPFQPYSEVFGIQRFRECELIHGRWAMLATLGAL 155          

HSP 2 Score: 50.447 bits (119), Expect = 9.766e-21
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 2
Query:    2 PLGLGKPTEYLQYDFDSLDQNLAKNDVGE 88
            P GLGKP EYLQ+D DSLDQNLAKN  G+
Sbjct:   80 PFGLGKPAEYLQFDIDSLDQNLAKNLAGD 108          
BLAST of CK739545 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 59.6918 bits (143), Expect = 3.232e-13
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 1
Query:  136 LQPYTEVFGLQRFRECELIHGRWAMLGTLGAI 231
            L PY+EVFGL RFRECELIHGRWAML  LGA+
Sbjct:  121 LAPYSEVFGLARFRECELIHGRWAMLACLGAL 152          

HSP 2 Score: 34.2686 bits (77), Expect = 3.232e-13
Identity = 15/28 (53.57%), Postives = 19/28 (67.86%), Query Frame = 2
Query:    2 PLGLGKPTEYLQYDFDSLDQNLAKNDVG 85
            PLGL KP+E++    D  DQN AKN+ G
Sbjct:   75 PLGLSKPSEFVVIGVDENDQNAAKNNKG 102          
The following BLAST results are available for this feature:
BLAST of CK739545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CB4C_ARATH4.734e-2489.19Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB4B_ARATH2.016e-2191.18Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4A_ARATH9.766e-2185.29Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB29_CHLRE3.232e-1381.25Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6383 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739545 ID=CK739545; Name=CK739545; organism=Citrus sinensis; type=EST; length=231bp
CCCGTTGGGGCTGGGGAAGCCAACAGAGTACTTGCAGTATGATTTTGACT
CGTTGGATCAGAACTTGGCCAAGAACGATGTCGGCGAGCCTTCTCGGAGT
GATTACTGATTCCGGGGAGCCTGCAGCCGACGCCGCTGCAGCCGTACACG
GAGGTATTTGGGCTGCAGAGGTTTAGAGAATGTGAGCTGATTCATGGAAG
GTGGGCCATGTTGGGTACCCTTGGCGCCATT
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