CK739545
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK739545 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 4.734e-24 Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 1 Query: 121 LQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAI 231 ++PTP QPYTEVFG+QRFRECELIHGRWAMLGTLGAI Sbjct: 120 IKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAI 156 HSP 2 Score: 53.1434 bits (126), Expect = 4.734e-24 Identity = 23/29 (79.31%), Postives = 24/29 (82.76%), Query Frame = 2 Query: 2 PLGLGKPTEYLQYDFDSLDQNLAKNDVGE 88 P GLGKP EYLQYDFD LDQNLAKN G+ Sbjct: 81 PFGLGKPAEYLQYDFDGLDQNLAKNVAGD 109
BLAST of CK739545 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 2.016e-21 Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 1 Query: 130 TPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAI 231 TP QPY+EVFGLQRFRECELIHGRWAML TLGAI Sbjct: 119 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGAI 152 HSP 2 Score: 51.2174 bits (121), Expect = 2.016e-21 Identity = 23/29 (79.31%), Postives = 24/29 (82.76%), Query Frame = 2 Query: 2 PLGLGKPTEYLQYDFDSLDQNLAKNDVGE 88 P GLGKP EYLQ+D DSLDQNLAKN GE Sbjct: 77 PFGLGKPAEYLQFDLDSLDQNLAKNLYGE 105
BLAST of CK739545 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 9.766e-21 Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 1 Query: 130 TPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAI 231 TP QPY+EVFG+QRFRECELIHGRWAML TLGA+ Sbjct: 122 TPFQPYSEVFGIQRFRECELIHGRWAMLATLGAL 155 HSP 2 Score: 50.447 bits (119), Expect = 9.766e-21 Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 2 Query: 2 PLGLGKPTEYLQYDFDSLDQNLAKNDVGE 88 P GLGKP EYLQ+D DSLDQNLAKN G+ Sbjct: 80 PFGLGKPAEYLQFDIDSLDQNLAKNLAGD 108
BLAST of CK739545 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3) HSP 1 Score: 59.6918 bits (143), Expect = 3.232e-13 Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 1 Query: 136 LQPYTEVFGLQRFRECELIHGRWAMLGTLGAI 231 L PY+EVFGL RFRECELIHGRWAML LGA+ Sbjct: 121 LAPYSEVFGLARFRECELIHGRWAMLACLGAL 152 HSP 2 Score: 34.2686 bits (77), Expect = 3.232e-13 Identity = 15/28 (53.57%), Postives = 19/28 (67.86%), Query Frame = 2 Query: 2 PLGLGKPTEYLQYDFDSLDQNLAKNDVG 85 PLGL KP+E++ D DQN AKN+ G Sbjct: 75 PLGLSKPSEFVVIGVDENDQNAAKNNKG 102 The following BLAST results are available for this feature:
BLAST of CK739545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CK739545 ID=CK739545; Name=CK739545; organism=Citrus sinensis; type=EST; length=231bpback to top |