CK739553

Overview
NameCK739553
Unique NameCK739553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length272
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739553 vs. ExPASy Swiss-Prot
Match: RS143_ARATH (40S ribosomal protein S14-3 OS=Arabidopsis thaliana GN=RPS14C PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.022e-25
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 2 
Query:   56 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETL 211
            MS+RKT+EPK ENVTLGPAVR+GE VFGV H+FASFNDTFIHVTDLSGRETL
Sbjct:    1 MSKRKTKEPKVENVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETL 52

HSP 2 Score: 39.2762 bits (90), Expect = 1.022e-25
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 3 
Query:  213 VRITGGMKVKADRDESSP 266
            VRITGGMKVKADRDESSP
Sbjct:   53 VRITGGMKVKADRDESSP 70
[Close]
BLAST of CK739553 vs. ExPASy Swiss-Prot
Match: RS142_MAIZE (40S ribosomal protein S14 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.253e-25
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 2 
Query:   62 RRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETL 211
            R+KTREPKEENV LGPAVR+GEHVFGVAHIFASFNDTFIHVTDLSGRETL
Sbjct:    4 RKKTREPKEENV-LGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETL 52

HSP 2 Score: 39.2762 bits (90), Expect = 2.253e-25
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 3 
Query:  213 VRITGGMKVKADRDESSP 266
            VRITGGMKVKADRDESSP
Sbjct:   53 VRITGGMKVKADRDESSP 70
[Close]
BLAST of CK739553 vs. ExPASy Swiss-Prot
Match: RS141_MAIZE (40S ribosomal protein S14 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.932e-25
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 2 
Query:   56 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETL 211
            MSRRKTREPKEENV LGP VR+GE VFGVAHIFASFNDTFIHVTDLSGRETL
Sbjct:    1 MSRRKTREPKEENV-LGPTVREGEFVFGVAHIFASFNDTFIHVTDLSGRETL 51

HSP 2 Score: 39.2762 bits (90), Expect = 2.932e-25
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 3 
Query:  213 VRITGGMKVKADRDESSP 266
            VRITGGMKVKADRDESSP
Sbjct:   52 VRITGGMKVKADRDESSP 69
[Close]
BLAST of CK739553 vs. ExPASy Swiss-Prot
Match: RS14_LUPLU (40S ribosomal protein S14 OS=Lupinus luteus GN=RPS14 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.968e-25
Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 2 
Query:   56 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETL 211
            MSRRK R+ KEE VTLGPAV DGEHVFGVA IFASFNDTFIHVTDLSGRETL
Sbjct:    1 MSRRKVRDTKEETVTLGPAVSDGEHVFGVARIFASFNDTFIHVTDLSGRETL 52

HSP 2 Score: 39.2762 bits (90), Expect = 4.968e-25
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 3 
Query:  213 VRITGGMKVKADRDESSP 266
            VRITGGMKVKADRDESSP
Sbjct:   53 VRITGGMKVKADRDESSP 70
[Close]
BLAST of CK739553 vs. ExPASy Swiss-Prot
Match: RS142_ARATH (40S ribosomal protein S14-2 OS=Arabidopsis thaliana GN=RPS14B PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.416e-25
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 2 
Query:   56 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETL 211
            MS+RKT+EPK E VTLGP+VR+GE VFGV HIFASFNDTFIHVTDLSGRETL
Sbjct:    1 MSKRKTKEPKVETVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETL 52

HSP 2 Score: 39.2762 bits (90), Expect = 8.416e-25
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 3 
Query:  213 VRITGGMKVKADRDESSP 266
            VRITGGMKVKADRDESSP
Sbjct:   53 VRITGGMKVKADRDESSP 70
[Close]
BLAST of CK739553 vs. ExPASy Swiss-Prot
Match: RS141_ARATH (40S ribosomal protein S14-1 OS=Arabidopsis thaliana GN=RPS14A PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.091e-24
Identity = 43/52 (82.69%), Postives = 48/52 (92.31%), Query Frame = 2 
Query:   56 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETL 211
            MS+RKT+EPK + VTLGP+VR+GE VFGV HIFASFNDTFIHVTDLSGRETL
Sbjct:    1 MSKRKTKEPKVDVVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETL 52

HSP 2 Score: 39.2762 bits (90), Expect = 4.091e-24
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 3 
Query:  213 VRITGGMKVKADRDESSP 266
            VRITGGMKVKADRDESSP
Sbjct:   53 VRITGGMKVKADRDESSP 70
[Close]
BLAST of CK739553 vs. ExPASy Swiss-Prot
Match: RS14_PODCA (40S ribosomal protein S14 OS=Podocoryne carnea GN=RPS14 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.862e-20
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 2 
Query:   56 MSRRKTREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETL 211
            M+ RK + PKEE V +LGP V DGE+VFGVAHIFASFNDTF+HVTDLSG+ET+
Sbjct:    1 MAPRKGKAPKEEQVISLGPQVADGENVFGVAHIFASFNDTFVHVTDLSGKETI 53

HSP 2 Score: 37.7354 bits (86), Expect = 1.862e-20
Identity = 16/22 (72.73%), Postives = 19/22 (86.36%), Query Frame = 3 
Query:  201 EKLFVRITGGMKVKADRDESSP 266
            ++   R+TGGMKVKADRDESSP
Sbjct:   50 KETIARVTGGMKVKADRDESSP 71
[Close]
BLAST of CK739553 vs. ExPASy Swiss-Prot
Match: RS14_MOUSE (40S ribosomal protein S14 OS=Mus musculus GN=Rps14 PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 3.152e-20
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 2 
Query:   56 MSRRKTREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLC 214
            M+ RK +E KEE V +LGP V +GE+VFGV HIFASFNDTF+HVTDLSG+ET+C
Sbjct:    1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETIC 54

HSP 2 Score: 37.3502 bits (85), Expect = 3.152e-20
Identity = 16/17 (94.12%), Postives = 17/17 (100.00%), Query Frame = 3 
Query:  216 RITGGMKVKADRDESSP 266
            R+TGGMKVKADRDESSP
Sbjct:   55 RVTGGMKVKADRDESSP 71
[Close]
BLAST of CK739553 vs. ExPASy Swiss-Prot
Match: RS14_HUMAN (40S ribosomal protein S14 OS=Homo sapiens GN=RPS14 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 3.152e-20
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 2 
Query:   56 MSRRKTREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLC 214
            M+ RK +E KEE V +LGP V +GE+VFGV HIFASFNDTF+HVTDLSG+ET+C
Sbjct:    1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETIC 54

HSP 2 Score: 37.3502 bits (85), Expect = 3.152e-20
Identity = 16/17 (94.12%), Postives = 17/17 (100.00%), Query Frame = 3 
Query:  216 RITGGMKVKADRDESSP 266
            R+TGGMKVKADRDESSP
Sbjct:   55 RVTGGMKVKADRDESSP 71
[Close]
BLAST of CK739553 vs. ExPASy Swiss-Prot
Match: RS14_CRIGR (40S ribosomal protein S14 OS=Cricetulus griseus GN=RPS14 PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 3.152e-20
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 2 
Query:   56 MSRRKTREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLC 214
            M+ RK +E KEE V +LGP V +GE+VFGV HIFASFNDTF+HVTDLSG+ET+C
Sbjct:    1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETIC 54

HSP 2 Score: 37.3502 bits (85), Expect = 3.152e-20
Identity = 16/17 (94.12%), Postives = 17/17 (100.00%), Query Frame = 3 
Query:  216 RITGGMKVKADRDESSP 266
            R+TGGMKVKADRDESSP
Sbjct:   55 RVTGGMKVKADRDESSP 71
The following BLAST results are available for this feature:
BLAST of CK739553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RS143_ARATH1.022e-2586.5440S ribosomal protein S14-3 OS=Arabidopsis thalian... [more]
RS142_MAIZE2.253e-2594.0040S ribosomal protein S14 OS=Zea mays PE=3 SV=1[more]
RS141_MAIZE2.932e-2592.3140S ribosomal protein S14 OS=Zea mays PE=3 SV=1[more]
RS14_LUPLU4.968e-2588.4640S ribosomal protein S14 OS=Lupinus luteus GN=RPS... [more]
RS142_ARATH8.416e-2584.6240S ribosomal protein S14-2 OS=Arabidopsis thalian... [more]
RS141_ARATH4.091e-2482.6940S ribosomal protein S14-1 OS=Arabidopsis thalian... [more]
RS14_PODCA1.862e-2073.5840S ribosomal protein S14 OS=Podocoryne carnea GN=... [more]
RS14_MOUSE3.152e-2070.3740S ribosomal protein S14 OS=Mus musculus GN=Rps14... [more]
RS14_HUMAN3.152e-2070.3740S ribosomal protein S14 OS=Homo sapiens GN=RPS14... [more]
RS14_CRIGR3.152e-2070.3740S ribosomal protein S14 OS=Cricetulus griseus GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6392 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739553 ID=CK739553; Name=CK739553; organism=Citrus sinensis; type=EST; length=272bp
TGCTGCTTCTGTATTTCGAGGCTTTTGTGATCAACTCTCCGTGTCATCAG
CAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAAGGAGGAAAATGTTACT
CTTGGACCTGCCGTTAGAGATGGCGAGCATGTATTTGGCGTTGCCCACAT
TTTTGCGTCGTTTAATGACACTTTCATTCATGTGACTGACTTGTCTGGAA
GAGAAACTCTTTGTGCGCATTACTGGTGGTATGAAGGTTAAAGCTGACAG
GGATGAATCCTCCCCCTTATGC
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