CK739554

Overview
NameCK739554
Unique NameCK739554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length371
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739554 vs. ExPASy Swiss-Prot
Match: Y8359_ORYSJ (Uncharacterized protein Os08g0359500 OS=Oryza sativa subsp. japonica GN=Os08g0359500 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.596e-40
Identity = 80/100 (80.00%), Postives = 88/100 (88.00%), Query Frame = 2 
Query:   71 MSRVPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAEKGWWKKLLRGDGKTPHY 370
            MSR PEVKWAQR DKV+ITVQL DAK+AKVNLEPEGVFSFSA+AG + +LYE KLEL DKVNVEESKI+VGVRSIFCIVEKAE  WWKKL+R D K PH+
Sbjct:    1 MSRHPEVKWAQRIDKVYITVQLADAKDAKVNLEPEGVFSFSATAGTDGNLYESKLELNDKVNVEESKISVGVRSIFCIVEKAEAKWWKKLVRDDQKAPHF 100
[Close]
BLAST of CK739554 vs. ExPASy Swiss-Prot
Match: Y8359_ORYSI (Uncharacterized protein OsI_027940 OS=Oryza sativa subsp. indica GN=OsI_027940 PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 7.596e-40
Identity = 80/100 (80.00%), Postives = 88/100 (88.00%), Query Frame = 2 
Query:   71 MSRVPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAEKGWWKKLLRGDGKTPHY 370
            MSR PEVKWAQR DKV+ITVQL DAK+AKVNLEPEGVFSFSA+AG + +LYE KLEL DKVNVEESKI+VGVRSIFCIVEKAE  WWKKL+R D K PH+
Sbjct:    1 MSRHPEVKWAQRIDKVYITVQLADAKDAKVNLEPEGVFSFSATAGTDGNLYESKLELNDKVNVEESKISVGVRSIFCIVEKAEAKWWKKLVRDDQKAPHF 100
[Close]
BLAST of CK739554 vs. ExPASy Swiss-Prot
Match: Y3377_ARATH (Uncharacterized protein At3g03773 OS=Arabidopsis thaliana GN=At3g03773 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.329e-22
Identity = 51/100 (51.00%), Postives = 68/100 (68.00%), Query Frame = 2 
Query:   71 MSRVPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAEKGWWKKLLRGDGKTPHY 370
            MSR PEV WAQR DKV++TV LPDAK+  V  EP+G+FSFSA  GA+   +E  LEL+ K+  E  K NVG+R+I   ++K E+ WW +LL+ + K   Y
Sbjct:    1 MSRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSA-LGAQGERFEFSLELYGKIMTEYRK-NVGLRNIIFSIQKEERSWWTRLLKSEEKPAPY 98
The following BLAST results are available for this feature:
BLAST of CK739554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y8359_ORYSJ7.596e-4080.00Uncharacterized protein Os08g0359500 OS=Oryza sati... [more]
Y8359_ORYSI7.596e-4080.00Uncharacterized protein OsI_027940 OS=Oryza sativa... [more]
Y3377_ARATH9.329e-2251.00Uncharacterized protein At3g03773 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6393 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739554 ID=CK739554; Name=CK739554; organism=Citrus sinensis; type=EST; length=371bp
GTCGCAACTCTCGCTCTCGCTCTCGCTCTCGCTCTAGGGTTTTACTGTTT
TCTTTCCATTTCGAGACAATATGAGCCGTGTTCCTGAGGTGAAGTGGGCC
CAGAGGCAAGATAAGGTATTTATAACCGTGCAATTACCTGACGCAAAAAA
TGCCAAGGTAAATCTTGAGCCAGAGGGAGTGTTCTCCTTCTCTGCTAGTG
CTGGTGCTGAAAACCACCTTTATGAGCTCAAGCTGGAGCTTTTTGATAAG
GTCAACGTGGAGGAAAGCAAAATTAATGTAGGTGTAAGGAGCATATTCTG
CATCGTGGAGAAGGCAGAAAAAGGATGGTGGAAGAAACTACTTCGTGGAG
ATGGCAAGACACCACATTATG
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