CK739555

Overview
NameCK739555
Unique NameCK739555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739555 vs. ExPASy Swiss-Prot
Match: HINT3_PONAB (Histidine triad nucleotide-binding protein 3 OS=Pongo abelii GN=HINT3 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.271e-18
Identity = 53/119 (44.54%), Postives = 69/119 (57.98%), Query Frame = 1
Query:    4 AGATSPTP------CVFCQIA-RNSTSTPLLHSD-EKVVAFQDIKPAAYRHYLVISVDHIPTVRDLQRRAEDYSLVRHMLNVGQELLQQ-DAPQSNQYRFGFHQPPLNSVNHLHLHCLA 333
            A A SP P      CVFC+IA R    T LLH + E ++ F+DIKPAA  HYLV+   HI   R L  R +   LV +M+ VG+ +L++ +       R GFH PP  S++HLHLH LA
Sbjct:   34 AAAKSPEPKDSDSTCVFCRIAGRQDPGTELLHCENEDLICFKDIKPAATHHYLVVPKKHIGNCRTL--RKDQVELVENMVTVGKTILERNNFTDFTNVRMGFHMPPFCSISHLHLHVLA 150          
BLAST of CK739555 vs. ExPASy Swiss-Prot
Match: HINT3_XENTR (Histidine triad nucleotide-binding protein 3 OS=Xenopus tropicalis GN=hint3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.406e-17
Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = 1
Query:   28 CVFCQIARNSTS-TPLLHSDEKVVAFQDIKPAAYRHYLVISVDHIPTVRDLQRRAEDYSLVRHMLNVGQELLQQ-DAPQSNQYRFGFHQPPLNSVNHLHLHCLA 333
            C+FC+IA    S   LLHSD+ +V F+DI+PA   HYLV+   H+ T + L +  +   L++ M+ VG+  LQ+ +       R GFH PP  S++HLHLH LA
Sbjct:   19 CIFCRIANKQESGAELLHSDDDLVCFKDIRPAVTHHYLVVPKKHVGTCKTLTK--DHVQLIKTMMEVGKSTLQKNNVTDLEDIRLGFHYPPFCSISHLHLHVLA 120          
BLAST of CK739555 vs. ExPASy Swiss-Prot
Match: HINT3_HUMAN (Histidine triad nucleotide-binding protein 3 OS=Homo sapiens GN=HINT3 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.406e-17
Identity = 52/119 (43.70%), Postives = 68/119 (57.14%), Query Frame = 1
Query:    4 AGATSPTP------CVFCQIA-RNSTSTPLLHSD-EKVVAFQDIKPAAYRHYLVISVDHIPTVRDLQRRAEDYSLVRHMLNVGQELLQQ-DAPQSNQYRFGFHQPPLNSVNHLHLHCLA 333
            A   SP P      CVFC+IA R    T LLH + E ++ F+DIKPAA  HYLV+   HI   R L  R +   LV +M+ VG+ +L++ +       R GFH PP  S++HLHLH LA
Sbjct:   34 AAGKSPEPKDYDSTCVFCRIAGRQDPGTELLHCENEDLICFKDIKPAATHHYLVVPKKHIGNCRTL--RKDQVELVENMVTVGKTILERNNFTDFTNVRMGFHMPPFCSISHLHLHVLA 150          
BLAST of CK739555 vs. ExPASy Swiss-Prot
Match: HINT3_RAT (Histidine triad nucleotide-binding protein 3 OS=Rattus norvegicus GN=Hint3 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.942e-15
Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = 1
Query:   28 CVFCQIARNST-STPLLHSDEK-VVAFQDIKPAAYRHYLVISVDHIPTVRDLQRRAEDYSLVRHMLNVGQELLQQ-DAPQSNQYRFGFHQPPLNSVNHLHLHCLA 333
            CVFC++A      T LL+ + K +V F+DIKPAA  HYLV+   HI + +DL +  +   +V  M+ VG+ +L++ +       R GFH PP  SV+HLHLH +A
Sbjct:   41 CVFCRVAAGQEPETELLYCENKDLVCFKDIKPAALHHYLVVPKKHIGSCKDLNK--DHIEMVESMVTVGKTILERNNFTDFTDVRMGFHVPPFCSVSHLHLHVIA 143          
BLAST of CK739555 vs. ExPASy Swiss-Prot
Match: HINT3_MOUSE (Histidine triad nucleotide-binding protein 3 OS=Mus musculus GN=Hint3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.490e-14
Identity = 42/105 (40.00%), Postives = 62/105 (59.05%), Query Frame = 1
Query:   28 CVFCQIARNST-STPLLHSD-EKVVAFQDIKPAAYRHYLVISVDHIPTVRDLQRRAEDYSLVRHMLNVGQELLQQ-DAPQSNQYRFGFHQPPLNSVNHLHLHCLA 333
            CVFC++A      T L H + E +V F+DIKPAA  HYLV+   HI + +DL +  +   +V  M+  G+ +L++ +       R GFH PP  S++HLHLH +A
Sbjct:   31 CVFCRVAAGQEPKTELFHCENEDLVCFKDIKPAALYHYLVVPKKHIGSCKDLNK--DHIEMVESMVAAGKTMLERNNFTDFTDVRMGFHVPPFCSISHLHLHVIA 133          
BLAST of CK739555 vs. ExPASy Swiss-Prot
Match: HINT3_DANRE (Histidine triad nucleotide-binding protein 3 OS=Danio rerio GN=hint3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.548e-14
Identity = 45/104 (43.27%), Postives = 57/104 (54.81%), Query Frame = 1
Query:   28 CVFCQIARNSTS-TPLLHSDEKVVAFQDIKPAAYRHYLVISVDHIPTVRDLQRRAEDYSLVRHMLNVGQELLQ-QDAPQSNQYRFGFHQPPLNSVNHLHLHCLA 333
            C+FC IA+     T +L  DE  V F+DI P A  HYLVI   HI +   L   A+D SLVR M  +G+ +L+  +         GFH PP  +V HLHLH LA
Sbjct:   23 CIFCTIAKGDDRYTEILAEDEDFVCFRDINPGAPHHYLVIPKKHIYSCLSLY--ADDISLVRGMAEMGRNVLKANNVTDLKDISLGFHVPPYITVPHLHLHVLA 124          
BLAST of CK739555 vs. ExPASy Swiss-Prot
Match: HINT3_BOVIN (Histidine triad nucleotide-binding protein 3 OS=Bos taurus GN=HINT3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.463e-14
Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = 1
Query:   10 ATSPTPCVFCQIARNST-STPLLHSD-EKVVAFQDIKPAAYRHYLVISVDHIPTVRDLQRRAEDYSLVRHMLNVGQELLQQ-DAPQSNQYRFGFHQPPLNSVNHLHLHCLA 333
            A   + CVFC+IA +    T LLH + E +V F+DIKPAA  HYLV+   H    + L++  +   L+ +M+ VG+ +L++ +       R GFH  P  S+ HLHLH LA
Sbjct:   42 ANYSSKCVFCRIAAHQDPGTELLHCENEDLVCFKDIKPAAPHHYLVVPKKHFENCKYLKK--DQIELIENMVTVGKAILERNNFTDFENTRMGFHVSPFCSIAHLHLHVLA 150          
The following BLAST results are available for this feature:
BLAST of CK739555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
HINT3_PONAB8.271e-1844.54Histidine triad nucleotide-binding protein 3 OS=Po... [more]
HINT3_XENTR2.406e-1742.31Histidine triad nucleotide-binding protein 3 OS=Xe... [more]
HINT3_HUMAN2.406e-1743.70Histidine triad nucleotide-binding protein 3 OS=Ho... [more]
HINT3_RAT2.942e-1541.90Histidine triad nucleotide-binding protein 3 OS=Ra... [more]
HINT3_MOUSE2.490e-1440.00Histidine triad nucleotide-binding protein 3 OS=Mu... [more]
HINT3_DANRE5.548e-1443.27Histidine triad nucleotide-binding protein 3 OS=Da... [more]
HINT3_BOVIN9.463e-1439.64Histidine triad nucleotide-binding protein 3 OS=Bo... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6394 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739555 ID=CK739555; Name=CK739555; organism=Citrus sinensis; type=EST; length=412bp
ATGGCGGGAGCGACGTCGCCGACGCCTTGCGTCTTCTGTCAGATCGCTCG
CAATTCGACCTCGACGCCGCTCCTTCATTCGGACGAGAAGGTCGTCGCTT
TTCAAGACATCAAGCCCGCTGCTTACAGGCATTACTTGGTTATTTCTGTG
GACCACATTCCAACTGTTAGAGATCTCCAGAGGAGAGCTGAAGACTACTC
ATTGGTGAGACACATGTTGAATGTTGGGCAAGAACTGTTACAACAAGATG
CTCCTCAGTCCAATCAGTACAGATTTGGGTTTCATCAGCCTCCGCTGAAC
AGTGTTAACCATCTTCACCTCCATTGTTTGGCTTCGCCTTTCATACCCAG
ATGGAAACATGTAAAATACTTGTCTCTGGGACCATTAGGTGGGTTCATTG
AAGCTGAGAAGT
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