CK739556

Overview
NameCK739556
Unique NameCK739556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739556 vs. ExPASy Swiss-Prot
Match: YOOF_SCHPO (Uncharacterized hydroxylase C887.15c OS=Schizosaccharomyces pombe GN=SPBC887.15c PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 8.422e-47
Identity = 80/145 (55.17%), Postives = 104/145 (71.72%), Query Frame = 2
Query:   68 VQILQIIIAMFVMDTWQYFVHRYMHQNKFLYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSGMTARTAVIFFCFAVIKTVDDHSGLWLPGNIFHLFFQNNTAYHDVHHQLQGLKYNYSQPFFSIWDRLLGTHMP 502
            V   Q   A F++D+WQYF HRY+H NK LY  IH+ HHRL VPYA+GALYNHP EGL+LDT G  +++L +G++ + AVIFF  + +KTVDDH G   P +   +FF NN  YHD+HHQ  G + N+SQPFF+ WD +LGT+MP
Sbjct:  129 VPAFQYFFAFFIIDSWQYFWHRYLHYNKKLYNMIHAHHHRLQVPYAMGALYNHPFEGLILDTFGAGVAYLAAGLSPQQAVIFFTLSTLKTVDDHCGYVFPYDPLQMFFANNARYHDLHHQPYGFQKNFSQPFFTFWDHVLGTYMP 273          
BLAST of CK739556 vs. ExPASy Swiss-Prot
Match: SUR2_YEAST (Sphingolipid C4-hydroxylase SUR2 OS=Saccharomyces cerevisiae GN=SUR2 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 9.019e-41
Identity = 79/159 (49.69%), Postives = 100/159 (62.89%), Query Frame = 2
Query:   77 LQIIIAMFVMDTWQYFVHRYMHQNKFLYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSGMTARTAVIFFCFAVIKTVDDHSGLWLPGNIFHLFFQNNTAYHDVHHQLQGLKYNYSQPFFSIWDRLLGTHMPYHLVKLPEGGFEARLKK 553
            L+I      +DTWQYF+HR MH NK LY+  HS HH L VPYA GAL+N+P+EG LLDTLG  ++  ++ +T R  +I F FA +KTVDDH G  LP + F   F NN  YHD+HHQ  G+K N++QPFF+ WD L  T+           GFE   KK
Sbjct:  159 LKIFAGFLFVDTWQYFLHRLMHMNKTLYKWFHSVHHELYVPYAYGALFNNPVEGFLLDTLGTGIAMTLTHLTHREQIILFTFATMKTVDDHCGYALPLDPFQWLFPNNAVYHDIHHQQFGIKTNFAQPFFTFWDNLFQTNFK---------GFEEYQKK 308          
BLAST of CK739556 vs. ExPASy Swiss-Prot
Match: ERG25_CHICK (C-4 methylsterol oxidase OS=Gallus gallus GN=SC4MOL PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.121e-17
Identity = 56/166 (33.73%), Postives = 84/166 (50.60%), Query Frame = 2
Query:   68 VQILQIIIAMFVMDTWQYFVHRYMHQNKFLYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSGMTARTAVIFFCFAV---IKTVDDHSGLWLPGNIFHLF-FQNNTAYHDVHHQLQGLKYNYSQPFFSIWDRLLGTHMPYHLVKLPEGGFEARLKK 553
            V + Q      + D W YF+HR +H +K +Y++IH  HH  V P+ + A Y HPLE L+L    GA  F+   +     V+ + + +   ++T+D HSG  +P N  HL  F     +HD HH       NY+   F+ WDR+ GT   +   K  E   + R+KK
Sbjct:  137 VLLAQCFGCAVIEDAWHYFLHRLLH-HKRIYKYIHKVHHEFVSPFGMQAEYAHPLETLIL----GAGFFIGIVVFCNHVVLLWAWVICRLMETIDVHSGYDIPLNPLHLVPFYAGARFHDFHH--MNFIGNYAST-FTWWDRIFGTDSQFIAYKEKEKKQQLRMKK 294          
BLAST of CK739556 vs. ExPASy Swiss-Prot
Match: ERG25_PIG (C-4 methylsterol oxidase OS=Sus scrofa GN=SC4MOL PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.549e-16
Identity = 52/141 (36.88%), Postives = 74/141 (52.48%), Query Frame = 2
Query:  101 VMDTWQYFVHRYMHQNKFLYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSGMTARTAVI----FFCFAVIKTVDDHSGLWLPGNIFHLF-FQNNTAYHDVHHQLQGLKYNYSQPFFSIWDRLLGTHMPYH 508
            + DTW YF+HR +H +K +Y++IH  HH    P+ + A Y HPLE L+L T      F +  M     VI    +    +I+T+D HSG  +P N  HL  F   + +HD HH       NY+   F+ WDR+ GT   Y+
Sbjct:  148 IEDTWHYFLHRLLH-HKRIYKYIHKIHHEFQAPFGMEAEYAHPLETLILGT-----GFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPFYAGSRHHDFHH--MNFIGNYAST-FTWWDRIFGTDAQYN 279          
BLAST of CK739556 vs. ExPASy Swiss-Prot
Match: ERG25_RAT (C-4 methylsterol oxidase OS=Rattus norvegicus GN=Sc4mol PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.023e-16
Identity = 50/141 (35.46%), Postives = 75/141 (53.19%), Query Frame = 2
Query:  101 VMDTWQYFVHRYMHQNKFLYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSGMTARTAVI----FFCFAVIKTVDDHSGLWLPGN-IFHLFFQNNTAYHDVHHQLQGLKYNYSQPFFSIWDRLLGTHMPYH 508
            + DTW YF+HR +H +K +Y++IH  HH    P+ I A Y HPLE L+L T      F +  +     VI    +    +++T+D HSG  +P N + ++ F     +HD HH       NY+   F+ WDR+ GT + YH
Sbjct:  148 IEDTWHYFLHRLLH-HKRIYKYIHKVHHEFQAPFGIEAEYAHPLETLILGT-----GFFIGIVLLCDHVILLWAWVTMRLLETIDVHSGYDIPLNPLNYIPFYTGARHHDFHH--MNFIGNYAST-FTWWDRIFGTDVQYH 279          
BLAST of CK739556 vs. ExPASy Swiss-Prot
Match: ERG25_MOUSE (C-4 methylsterol oxidase OS=Mus musculus GN=Sc4mol PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.642e-16
Identity = 51/141 (36.17%), Postives = 73/141 (51.77%), Query Frame = 2
Query:  101 VMDTWQYFVHRYMHQNKFLYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSGMTARTAVI----FFCFAVIKTVDDHSGLWLPGNIFHLF-FQNNTAYHDVHHQLQGLKYNYSQPFFSIWDRLLGTHMPYH 508
            + DTW YF+HR +H +K +Y++IH  HH    P+ I A Y HPLE L+L T      F +  +     VI    +    +++T+D HSG  +P N  +L  F     +HD HH       NY+   F+ WD+L GT   YH
Sbjct:  148 IEDTWHYFLHRLLH-HKRIYKYIHKVHHEFQAPFGIEAEYAHPLETLILGT-----GFFIGIVLLCDHVILLWAWVTIRLLETIDVHSGYDIPLNPLNLVPFYTGARHHDFHH--MNFIGNYAST-FTWWDKLFGTDAQYH 279          
BLAST of CK739556 vs. ExPASy Swiss-Prot
Match: ERG25_MACFA (C-4 methylsterol oxidase OS=Macaca fascicularis GN=SC4MOL PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.451e-16
Identity = 52/153 (33.99%), Postives = 78/153 (50.98%), Query Frame = 2
Query:  101 VMDTWQYFVHRYMHQNKFLYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSGMTARTAVI----FFCFAVIKTVDDHSGLWLPGNIFHLF-FQNNTAYHDVHHQLQGLKYNYSQPFFSIWDRLLGTHMPYHLVKLPEGGFEAR 544
            + DTW YF+HR +H +K +Y++IH  HH    P+ + A Y HPLE L+L T      F +  +     VI    +    +++T+D HSG  +P N  +L  F   + +HD HH       NY+   F+ WDR+ GT   YH     +  FE +
Sbjct:  148 IEDTWHYFMHRLLH-HKRIYKYIHKVHHEFQAPFGMEAEYAHPLETLILGT-----GFFIGIVLLCDHVILLWAWVTIRLLETIDVHSGYDIPLNPLNLIPFYAGSRHHDFHH--MNFIGNYAST-FTWWDRIFGTDSQYHAYYEKKKKFEKK 291          
BLAST of CK739556 vs. ExPASy Swiss-Prot
Match: ERG25_DANRE (C-4 methylsterol oxidase OS=Danio rerio GN=sc4mol PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.688e-16
Identity = 50/152 (32.89%), Postives = 76/152 (50.00%), Query Frame = 2
Query:   65 PVQILQIIIAMFVMDTWQYFVHRYMHQNKFLYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSGMTARTAVIFFC---FAVIKTVDDHSGLWLPGNIFHLF-FQNNTAYHDVHHQLQGLKYNYSQPFFSIWDRLLGTHMPYH 508
            P  + Q      + DTW YF+HR +H  + +Y++IH  HH    P+ + A Y HPLE L+L    GA  F+ + +     ++ +    F +++T+D HSG  +P N  HL  F     +HD HH       NY    F+ WDRL  T   ++
Sbjct:  136 PFLLAQCFGCAVIEDTWHYFLHRALHHRR-IYKYIHKVHHDFTSPFGMQAEYAHPLETLIL----GAGFFIGTMVFCNHMILLWAWVTFRLLETIDVHSGYDIPLNPLHLIPFYAGARFHDFHH--MNFVGNYGST-FTWWDRLFDTDSQFN 279          
BLAST of CK739556 vs. ExPASy Swiss-Prot
Match: ERG25_PONAB (C-4 methylsterol oxidase OS=Pongo abelii GN=SC4MOL PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.713e-15
Identity = 51/153 (33.33%), Postives = 77/153 (50.33%), Query Frame = 2
Query:  101 VMDTWQYFVHRYMHQNKFLYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSGMTARTAVI----FFCFAVIKTVDDHSGLWLPGNIFHLF-FQNNTAYHDVHHQLQGLKYNYSQPFFSIWDRLLGTHMPYHLVKLPEGGFEAR 544
            + DTW YF+HR +H +K +Y++IH  HH    P+ + A Y HPLE L+L T      F +  +     VI    +    +++T+D HSG  +P N  +L  F   + +HD HH       NY+   F+ WDR+ GT   Y+        FE +
Sbjct:  148 IEDTWHYFLHRLLH-HKRIYKYIHKVHHEFQAPFGMEAEYAHPLETLILGT-----GFFIGIVLLCDHVILLWAWVTIRLLETIDVHSGYDIPLNPLNLIPFYAGSRHHDFHH--MNFIGNYAST-FTWWDRIFGTDSQYNAYNEKRKKFEKK 291          
BLAST of CK739556 vs. ExPASy Swiss-Prot
Match: ERG25_HUMAN (C-4 methylsterol oxidase OS=Homo sapiens GN=SC4MOL PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.713e-15
Identity = 51/153 (33.33%), Postives = 77/153 (50.33%), Query Frame = 2
Query:  101 VMDTWQYFVHRYMHQNKFLYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSGMTARTAVI----FFCFAVIKTVDDHSGLWLPGNIFHLF-FQNNTAYHDVHHQLQGLKYNYSQPFFSIWDRLLGTHMPYHLVKLPEGGFEAR 544
            + DTW YF+HR +H +K +Y++IH  HH    P+ + A Y HPLE L+L T      F +  +     VI    +    +++T+D HSG  +P N  +L  F   + +HD HH       NY+   F+ WDR+ GT   Y+        FE +
Sbjct:  148 IEDTWHYFLHRLLH-HKRIYKYIHKVHHEFQAPFGMEAEYAHPLETLILGT-----GFFIGIVLLCDHVILLWAWVTIRLLETIDVHSGYDIPLNPLNLIPFYAGSRHHDFHH--MNFIGNYAST-FTWWDRIFGTDSQYNAYNEKRKKFEKK 291          
The following BLAST results are available for this feature:
BLAST of CK739556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
YOOF_SCHPO8.422e-4755.17Uncharacterized hydroxylase C887.15c OS=Schizosacc... [more]
SUR2_YEAST9.019e-4149.69Sphingolipid C4-hydroxylase SUR2 OS=Saccharomyces ... [more]
ERG25_CHICK3.121e-1733.73C-4 methylsterol oxidase OS=Gallus gallus GN=SC4MO... [more]
ERG25_PIG1.549e-1636.88C-4 methylsterol oxidase OS=Sus scrofa GN=SC4MOL P... [more]
ERG25_RAT2.023e-1635.46C-4 methylsterol oxidase OS=Rattus norvegicus GN=S... [more]
ERG25_MOUSE2.642e-1636.17C-4 methylsterol oxidase OS=Mus musculus GN=Sc4mol... [more]
ERG25_MACFA3.451e-1633.99C-4 methylsterol oxidase OS=Macaca fascicularis GN... [more]
ERG25_DANRE7.688e-1632.89C-4 methylsterol oxidase OS=Danio rerio GN=sc4mol ... [more]
ERG25_PONAB1.713e-1533.33C-4 methylsterol oxidase OS=Pongo abelii GN=SC4MOL... [more]
ERG25_HUMAN1.713e-1533.33C-4 methylsterol oxidase OS=Homo sapiens GN=SC4MOL... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6395 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739556 ID=CK739556; Name=CK739556; organism=Citrus sinensis; type=EST; length=572bp
ACAGTTACTTTTCATGTTGACCTCGAAGGCAGACGCATCCGGCATCACAA
CCCAGGCATCGATTCCTGTGCAGATTCTGCAGATTATCATCGCGATGTTT
GTCATGGATACATGGCAGTACTTTGTGCACCGATATATGCATCAGAACAA
ATTCTTGTATCGTCATATCCACTCTCAGCACCATAGGCTGGTTGTTCCTT
ATGCAATCGGCGCCCTTTACAATCACCCACTTGAGGGACTTTTGCTCGAC
ACTTTGGGTGGAGCCCTCTCTTTTCTTGTCTCGGGAATGACTGCACGAAC
AGCCGTGATATTTTTCTGCTTTGCTGTGATTAAAACTGTTGATGATCACT
CTGGGCTTTGGTTGCCTGGTAATATCTTCCACTTGTTCTTCCAGAACAAC
ACCGCTTATCACGATGTCCACCATCAACTTCAGGGCTTGAAGTACAACTA
TTCTCAGCCATTCTTCTCAATATGGGATAGACTTCTTGGAACTCACATGC
CTTACCATCTAGTAAAGCTACCTGAAGGAGGTTTTGAGGCTCGGCTAAAG
AAAGACTAGATGCTATTAAGAC
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