CK739558

Overview
NameCK739558
Unique NameCK739558
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739558 vs. ExPASy Swiss-Prot
Match: PSBS_SOLLC (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 2.579e-56
Identity = 106/138 (76.81%), Postives = 118/138 (85.51%), Query Frame = 2
Query:    2 EAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 415
            EAEP           GAIGALGDRGKFVD+P  PTGL  AVIPPGKS +SALGL EGGP+FGFTK+NELFVGRLAQLGIAFS+IGEIITGKGALAQLN ETG+PINEIEPL+LFN+ FFF AA+NPGTGKF+TDE+E+
Sbjct:  139 EAEPLLLFFILFNLLGAIGALGDRGKFVDDPTPPTGLEKAVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276          

HSP 2 Score: 92.8189 bits (229), Expect = 1.251e-18
Identity = 51/96 (53.12%), Postives = 63/96 (65.62%), Query Frame = 2
Query:  122 VIPPGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNP--GTGKFVTD 403
            V PP +  +   G+       GFTK NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI E EPL+LF ++F  + A+      GKFV D
Sbjct:   73 VAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDD 168          
BLAST of CK739558 vs. ExPASy Swiss-Prot
Match: PSBS_TOBAC (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.183e-55
Identity = 105/138 (76.09%), Postives = 117/138 (84.78%), Query Frame = 2
Query:    2 EAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 415
            EAEP           GAIGAL DRGKF+D+P  PTGL  AVIPPGK  +SALGL EGGP+F FTK+NELFVGRLAQLGIAFS+IGEIITGKGALAQLN ETG+PINEIEPL+LFN++FFFVAA+NPGTGKFVTDE+EE
Sbjct:  137 EAEPLLLFFILFNLLGAIGALEDRGKFIDDPAPPTGLDKAVIPPGKGFKSALGLSEGGPLFEFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIVFFFVAAINPGTGKFVTDEEEE 274          

HSP 2 Score: 91.6633 bits (226), Expect = 2.788e-18
Identity = 51/97 (52.58%), Postives = 65/97 (67.01%), Query Frame = 2
Query:  122 VIP-PGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALN--PGTGKFVTD 403
            V+P P + +   +    GG   GFTK NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI E EPL+LF ++F  + A+      GKF+ D
Sbjct:   72 VVPKPKEKVEDGIFGTSGG--IGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDD 166          
BLAST of CK739558 vs. ExPASy Swiss-Prot
Match: PSBS_SOLSG (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 8.297e-55
Identity = 103/138 (74.64%), Postives = 117/138 (84.78%), Query Frame = 2
Query:    2 EAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 415
            EAEP           GAIGALGDRG+F+D+P   TGL  AVIPPGKS +SALGL EGGP+FGFTK+NELFVGRLAQLGIAFS+IGEIITGKGALAQLN ETG+PINEIEPL+LFN+ FFF AA+NPGTGKF+TDE+E+
Sbjct:  139 EAEPLLLFFILFNLLGAIGALGDRGRFIDDPAPATGLEKAVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276          

HSP 2 Score: 91.2781 bits (225), Expect = 3.641e-18
Identity = 49/96 (51.04%), Postives = 63/96 (65.62%), Query Frame = 2
Query:  122 VIPPGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNP--GTGKFVTD 403
            V PP +  +   G+       GFTK NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI E EPL+LF ++F  + A+      G+F+ D
Sbjct:   73 VAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDD 168          
BLAST of CK739558 vs. ExPASy Swiss-Prot
Match: PSBS_SPIOL (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.414e-54
Identity = 107/138 (77.54%), Postives = 117/138 (84.78%), Query Frame = 2
Query:    2 EAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 415
            EAEP           GAIGALGDRG+FVDEP   TGL  AVIPPGK +RSALGLK  GP+FGFTKSNELFVGRLAQLG AFSLIGEIITGKGALAQLNIETG+PINEIEPLVL NV+FFF+AA+NPGTGKF+TD++EE
Sbjct:  138 EAEPLLLFFILFTLLGAIGALGDRGRFVDEPT--TGLEKAVIPPGKDVRSALGLKTKGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAINPGTGKFITDDEEE 273          

HSP 2 Score: 86.6557 bits (213), Expect = 8.968e-17
Identity = 44/75 (58.67%), Postives = 56/75 (74.67%), Query Frame = 2
Query:  185 GFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNP--GTGKFVTD 403
            GFTK NELFVGR+A +G A SL+GE ITGKG L+QLN+ETGIPI E EPL+LF ++F  + A+      G+FV +
Sbjct:   93 GFTKENELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDE 167          
BLAST of CK739558 vs. ExPASy Swiss-Prot
Match: PSBS_ARATH (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.044e-53
Identity = 107/138 (77.54%), Postives = 116/138 (84.06%), Query Frame = 2
Query:    2 EAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 415
            EAEP           GAIGALGDRGKFVD+P  PTGL  AVIPPGK++RSALGLKE GP+FGFTK+NELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPI +IEPLVL NV FFF AA+NPG GKF+TD+ EE
Sbjct:  129 EAEPLLLFFILFTLLGAIGALGDRGKFVDDP--PTGLEKAVIPPGKNVRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVLLNVAFFFFAAINPGNGKFITDDGEE 264          

HSP 2 Score: 91.2781 bits (225), Expect = 3.641e-18
Identity = 46/75 (61.33%), Postives = 57/75 (76.00%), Query Frame = 2
Query:  185 GFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNP--GTGKFVTD 403
            GFTK+NELFVGR+A +G A SL+GE +TGKG LAQLN+ETGIPI E EPL+LF ++F  + A+      GKFV D
Sbjct:   84 GFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDD 158          
The following BLAST results are available for this feature:
BLAST of CK739558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSBS_SOLLC2.579e-5676.81Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_TOBAC2.183e-5576.09Photosystem II 22 kDa protein, chloroplastic OS=Ni... [more]
PSBS_SOLSG8.297e-5574.64Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_SPIOL2.414e-5477.54Photosystem II 22 kDa protein, chloroplastic OS=Sp... [more]
PSBS_ARATH2.044e-5377.54Photosystem II 22 kDa protein, chloroplastic OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_5945 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739558 ID=CK739558; Name=CK739558; organism=Citrus sinensis; type=EST; length=569bp
TGAAGCAGAGCCACTGCTTTTATTTTTCATCTTGTTCACCTTGCTTGGAG
CAATTGGAGCTTTGGGTGACCGTGGTAAGTTCGTTGATGAGCCAGATGAG
CCCACTGGGCTCGGAGGAGCTGTCATTCCTCCAGGCAAAAGCTTAAGATC
AGCGTTGGGTCTCAAGGAAGGAGGTCCCATATTTGGATTCACGAAGTCAA
ACGAGCTGTTTGTGGGAAGATTGGCTCAGTTGGGTATTGCATTCTCTTTG
ATTGGAGAAATCATAACAGGGAAAGGAGCTCTAGCACAACTCAACATTGA
GACTGGGATCCCCATCAACGAAATCGAACCACTTGTGCTGTTCAACGTTA
TCTTCTTCTTTGTTGCCGCATTGAATCCTGGAACTGGTAAATTTGTCACA
GATGAAGATGAGGAGTAGATGAAACGTGGAAGCTGTTCCTGTTTACTTTA
TTATGATAAACTTGAATTTCCATTCAATGTAAAAGATAATATTTTGGCGG
CATCTCTCTCTCTCTCTCTCTTTCTGGCAAATGAATCCGTGTTATTATTA
CTAAAAAAAAAAAAAAAAA
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