CK739561

Overview
NameCK739561
Unique NameCK739561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length437
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739561 vs. ExPASy Swiss-Prot
Match: RS25_SOLLC (40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.103e-31
Identity = 68/74 (91.89%), Postives = 73/74 (98.65%), Query Frame = 1
Query:  130 EKVNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRATNT 351
            EKVNNMVLFD++TYDKLLSEAPKYKLITPS+LSDRLRI+GSLARKAIR+LMARG IRMVSAHASQQIYTRATNT
Sbjct:   35 EKVNNMVLFDKSTYDKLLSEAPKYKLITPSVLSDRLRISGSLARKAIRDLMARGSIRMVSAHASQQIYTRATNT 108          
BLAST of CK739561 vs. ExPASy Swiss-Prot
Match: RS252_ARATH (40S ribosomal protein S25-2 OS=Arabidopsis thaliana GN=RPS25B PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.103e-31
Identity = 67/74 (90.54%), Postives = 73/74 (98.65%), Query Frame = 1
Query:  130 EKVNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRATNT 351
            EKVNNMVLFDQ TYDKLL+EAPK+KLITPSILSDR+RINGSLAR+AIRELMA+GLIRMVSAH+SQQIYTRATNT
Sbjct:   35 EKVNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108          
BLAST of CK739561 vs. ExPASy Swiss-Prot
Match: RS254_ARATH (40S ribosomal protein S25-4 OS=Arabidopsis thaliana GN=RPS25E PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.882e-31
Identity = 66/74 (89.19%), Postives = 74/74 (100.00%), Query Frame = 1
Query:  130 EKVNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRATNT 351
            EKVNNMVLFDQATYDKLL+EAPK+KLITPSILSDR+RINGSLAR+AIRELMA+G+IRMV+AH+SQQIYTRATNT
Sbjct:   35 EKVNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108          
BLAST of CK739561 vs. ExPASy Swiss-Prot
Match: RS253_ARATH (40S ribosomal protein S25-3 OS=Arabidopsis thaliana GN=RPS25D PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 5.476e-31
Identity = 67/73 (91.78%), Postives = 72/73 (98.63%), Query Frame = 1
Query:  130 EKVNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRATN 348
            EKVNNMVLFDQATYDKLLSEAPK+KLITPSILSDRLRINGSLAR+AIRELMA+G IRMVSAH+SQQIYTRAT+
Sbjct:   35 EKVNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107          
BLAST of CK739561 vs. ExPASy Swiss-Prot
Match: RS251_ARATH (40S ribosomal protein S25-1 OS=Arabidopsis thaliana GN=RPS25A PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.142e-28
Identity = 63/72 (87.50%), Postives = 68/72 (94.44%), Query Frame = 1
Query:  130 EKVNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 345
            EKVNNMVLFDQATYDKL+SEAPK+KLITPSILSDRLRINGSLARKAIR+LM +G IRMVS H+SQQI TRAT
Sbjct:   34 EKVNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTHSSQQINTRAT 105          
BLAST of CK739561 vs. ExPASy Swiss-Prot
Match: RS25_AMACR (40S ribosomal protein S25 OS=Amaranthus cruentus GN=RPS25 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.558e-22
Identity = 51/73 (69.86%), Postives = 63/73 (86.30%), Query Frame = 1
Query:  130 EKVNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRATN 348
            EKVNN+VLFD AT+DKLLSEA K K++T + LS+R RINGSLAR+AIREL++RG I+MV  H+S QIYTR+TN
Sbjct:   34 EKVNNLVLFDNATFDKLLSEAGKQKVVTAATLSERFRINGSLARRAIRELVSRGAIKMVCHHSSLQIYTRSTN 106          
BLAST of CK739561 vs. ExPASy Swiss-Prot
Match: RS25_BRABE (40S ribosomal protein S25 OS=Branchiostoma belcheri GN=RPS25 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.352e-21
Identity = 46/72 (63.89%), Postives = 63/72 (87.50%), Query Frame = 1
Query:  130 EKVNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 345
            +K+NN+VLFD+ATYDKL  E P YKLITPS++S+RL+I GSLAR A++EL ++G+I++VS H++Q IYTRAT
Sbjct:   38 DKLNNLVLFDKATYDKLYKEVPSYKLITPSVVSERLKIRGSLARAALKELHSKGMIKLVSKHSAQVIYTRAT 109          
BLAST of CK739561 vs. ExPASy Swiss-Prot
Match: RS25_SHEEP (40S ribosomal protein S25 OS=Ovis aries GN=RPS25 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.710e-21
Identity = 45/72 (62.50%), Postives = 62/72 (86.11%), Query Frame = 1
Query:  130 EKVNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 345
            +K+NN+VLFD+ATYDKL  E P YKLITP+++S+RL+I GSLAR A++EL+++GLI++VS H +Q IYTR T
Sbjct:   42 DKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNT 113          
BLAST of CK739561 vs. ExPASy Swiss-Prot
Match: RS25_RAT (40S ribosomal protein S25 OS=Rattus norvegicus GN=Rps25 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.710e-21
Identity = 45/72 (62.50%), Postives = 62/72 (86.11%), Query Frame = 1
Query:  130 EKVNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 345
            +K+NN+VLFD+ATYDKL  E P YKLITP+++S+RL+I GSLAR A++EL+++GLI++VS H +Q IYTR T
Sbjct:   42 DKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNT 113          
BLAST of CK739561 vs. ExPASy Swiss-Prot
Match: RS25_MOUSE (40S ribosomal protein S25 OS=Mus musculus GN=Rps25 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.710e-21
Identity = 45/72 (62.50%), Postives = 62/72 (86.11%), Query Frame = 1
Query:  130 EKVNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 345
            +K+NN+VLFD+ATYDKL  E P YKLITP+++S+RL+I GSLAR A++EL+++GLI++VS H +Q IYTR T
Sbjct:   42 DKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNT 113          
The following BLAST results are available for this feature:
BLAST of CK739561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RS25_SOLLC1.103e-3191.8940S ribosomal protein S25 OS=Solanum lycopersicum ... [more]
RS252_ARATH1.103e-3190.5440S ribosomal protein S25-2 OS=Arabidopsis thalian... [more]
RS254_ARATH1.882e-3189.1940S ribosomal protein S25-4 OS=Arabidopsis thalian... [more]
RS253_ARATH5.476e-3191.7840S ribosomal protein S25-3 OS=Arabidopsis thalian... [more]
RS251_ARATH1.142e-2887.5040S ribosomal protein S25-1 OS=Arabidopsis thalian... [more]
RS25_AMACR3.558e-2269.8640S ribosomal protein S25 OS=Amaranthus cruentus G... [more]
RS25_BRABE1.352e-2163.8940S ribosomal protein S25 OS=Branchiostoma belcher... [more]
RS25_SHEEP6.710e-2162.5040S ribosomal protein S25 OS=Ovis aries GN=RPS25 P... [more]
RS25_RAT6.710e-2162.5040S ribosomal protein S25 OS=Rattus norvegicus GN=... [more]
RS25_MOUSE6.710e-2162.5040S ribosomal protein S25 OS=Mus musculus GN=Rps25... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5948 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739561 ID=CK739561; Name=CK739561; organism=Citrus sinensis; type=EST; length=437bp
CACTTCTGTCTGTCTGATCAGATCCAATGGCTCCAAAGAAGGACAAGGGC
TCCCCCTCCATCCTCAAAGCCTGCGAAATCCGGAGGCGGCAAGCAGAAGA
AGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAAGTGAACAACATGGTG
TTGTTTGATCAGGCAACCTATGACAAGCTTCTGTCCGAGGCTCCTAAATA
CAAGCTTATCACTCCTTCCATTCTCTCCGATCGTCTAAGGATTAATGGAT
CGCTTGCAAGGAAGGCAATAAGAGAGCTTATGGCTAGAGGTTTGATCAGG
ATGGTGTCTGCTCACGCAAGCCAGCAGATTTACACTAGGGCAACCAACAC
CTAAGTCTCTTTTGATATTTGCTTCTTAGTTTATATGTAGTTTCGTTCTG
CCGTGTTTTGACTGCTATTATTTTTGTTTCTTGTGAA
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