CK739564

Overview
NameCK739564
Unique NameCK739564
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK739564 vs. ExPASy Swiss-Prot
Match: Y5994_ARATH (Uncharacterized protein At5g49945 OS=Arabidopsis thaliana GN=At5g49945 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.521e-19
Identity = 51/85 (60.00%), Postives = 64/85 (75.29%), Query Frame = 2 
Query:  155 YPITLI*SGRLQAQSTGSI*NRGSQTEGSPRAYKELQNARQEALQRKKADRKKMIEEADAKLSAEAIRKKEAKERARQMKKAVPK 409
            Y I L+   RL +Q+         + + +  AYKEL NARQEALQ+KKA++KKM+EEA+AK+SAE IRKKEAKERARQ+KKAVPK
Sbjct:  391 YYIDLVGRYRLSSQARNK--TESGRQKAAEEAYKELHNARQEALQKKKAEKKKMMEEAEAKMSAEVIRKKEAKERARQVKKAVPK 473

HSP 2 Score: 92.8189 bits (229), Expect = 9.862e-19
Identity = 48/140 (34.29%), Postives = 76/140 (54.29%), Query Frame = 1 
Query:   10 KAFEKHGKDFISMHFSDQHPGTHRKMLL*KFGLPDANNMADMTRLVALVPYYIDLIGTFTSSVHRLDLKQRQPDRRQPKSIQRTSKC*AGSLAEKXXXXXXXXXXXXCKAICRGYSQEGSERACSSDEESCAEMKMTRGH 429
            KA +K+GK+F+SMH SDQHPG H+KM+L KF LPDA +M D+ RLVAL+PYYIDL+G +  S    +  +    +   ++ +        +L +K             K       ++ ++      +++  +MKM+R H
Sbjct:  341 KAVDKYGKNFMSMHISDQHPGKHKKMMLFKFSLPDAKHMDDIVRLVALIPYYIDLVGRYRLSSQARNKTESGRQKAAEEAYKELHNARQEALQKKKAEKKKMMEEAEAKMSAEVIRKKEAKERARQVKKAVPKMKMSRSH 480
The following BLAST results are available for this feature:
BLAST of CK739564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5994_ARATH1.521e-1960.00Uncharacterized protein At5g49945 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_5951 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739564 ID=CK739564; Name=CK739564; organism=Citrus sinensis; type=EST; length=515bp
GTTCGGCGAAAAGCTTTTGAAAAACATGGAAAGGATTTCATATCAATGCA
TTTTTCTGATCAACACCCTGGCACACATAGGAAGATGCTGTTGTGAAAGT
TTGGCCTACCTGATGCCAACAACATGGCTGATATGACTCGATTGGTTGCT
CTTGTACCCTATTACATTGATTTGATCGGGACGTTTACAAGCTCAGTCCA
CAGGCTCGATCTAAAACAGAGGCAGCCAGACAGAAGGCAGCCCAAGAGCA
TACAAAGAACTTCAAAATGCTAGGCAGGAAGCCTTGCAGAGAAAGAAGGC
AGATAGGAAGAAGATGATTGAGGAGGCAGATGCAAAGCTATCTGCAGAGG
CTATTCGCAAGAAGGAAGCGAAAGAGCGTGCTCGTCAGATGAAGAAAGCT
GTGCCGAAATGAAGATGACCCGAGGTCACTAGTCAATTTCCTGCTCTGTC
ATGTGGCACTCTGGAATTTGCCTTCTAGTTTTATCTCTATTTTTGGGGTC
ATACTTGGCCTACCT
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