CK739568

Overview
NameCK739568
Unique NameCK739568
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739568 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 1.173e-42
Identity = 66/86 (76.74%), Postives = 77/86 (89.53%), Query Frame = 2
Query:    2 SPTKPPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKP 259
            SPT PP VCDNYY+CP+S TCCC++EYG  C+AWGCCPLE ATCCDDHYSCCPH+YPICNV+ GTCLM+KD+PL V+AL+RT AKP
Sbjct:  359 SPTPPPTVCDNYYTCPDSTTCCCIYEYGKYCYAWGCCPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKP 444          
BLAST of CK739568 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 2.001e-42
Identity = 64/93 (68.82%), Postives = 80/93 (86.02%), Query Frame = 2
Query:    2 SPTKPPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQ 280
            SP KPP  CD+YY+CPESNTCCC+FEYG  CFAWGCCPLEAATCCDD+YSCCPH+YP+C++  GTCL+SK++P  V+AL+R PA P+W+ G +
Sbjct:  367 SPIKPPTQCDSYYTCPESNTCCCLFEYGKYCFAWGCCPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKRKPATPFWSQGRK 459          
BLAST of CK739568 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 5.099e-38
Identity = 62/94 (65.96%), Postives = 71/94 (75.53%), Query Frame = 2
Query:    2 SPTKPPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQG 283
            SP KPP  CD Y  C    TCCC+ ++  SCF+WGCCPLE ATCC+DHYSCCPHDYPICNVR GTC MSK NPLGV+A++R  A+P  A GN G
Sbjct:  248 SPVKPPTECDEYSQCAVGTTCCCILQFRRSCFSWGCCPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGG 341          
BLAST of CK739568 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 6.038e-31
Identity = 52/84 (61.90%), Postives = 63/84 (75.00%), Query Frame = 2
Query:    5 PTKPPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAK 256
            P+ P  VCD+ +SCP  +TCCC F + N C  WGCCP+E ATCC DH SCCP DYP+CN RAGTC  SK++PL V+AL+RT AK
Sbjct:  379 PSAPDHVCDDNFSCPAGSTCCCAFGFRNLCLVWGCCPVEGATCCKDHASCCPPDYPVCNTRAGTCSASKNSPLSVKALKRTLAK 462          
BLAST of CK739568 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 4.191e-24
Identity = 42/86 (48.84%), Postives = 52/86 (60.47%), Query Frame = 2
Query:   14 PPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRA----LRRTPAKP 259
            PP  CD Y  CP   TCCC +   N C  WGCCP+E ATCC DH +CCP +YP+CN +A TC  SK++P  +R      R  P +P
Sbjct:  391 PPQQCDRYSKCPAGTTCCCNYGIRNHCIVWGCCPVEGATCCKDHSTCCPKEYPVCNAKARTCSKSKNSPYNIRTPAAMARSVPEQP 476          
The following BLAST results are available for this feature:
BLAST of CK739568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ORYA_ORYSJ1.173e-4276.74Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
RD21A_ARATH2.001e-4268.82Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CYSPL_SOLLC5.099e-3865.96Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYB_ORYSJ6.038e-3161.90Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSP1_ORYSJ4.191e-2448.84Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_5955 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739568 ID=CK739568; Name=CK739568; organism=Citrus sinensis; type=EST; length=449bp
CTCTCCAACAAAGCCTCCTGCTGTGTGTGACAATTATTACTCTTGCCCTG
AGAGCAACACTTGCTGCTGTGTCTTTGAGTATGGTAACTCTTGCTTTGCA
TGGGGATGCTGCCCGCTTGAGGCTGCCACCTGCTGTGATGACCACTATAG
CTGCTGCCCACATGACTATCCCATCTGTAATGTTCGTGCTGGGACCTGCT
TGATGAGCAAGGACAACCCATTGGGAGTGAGGGCATTGCGACGCACCCCT
GCTAAACCTTACTGGGCTCATGGAAATCAAGGTGGAAGTAGCAGTGCTTA
ATTATAGTTGGCACTGTAAGAGCAGTGGAAGGCCGAAGGGAGGATGAAGA
TATTCGTGCTTGTGAATGAGTTTCTCCCCGGCCTTAGTTCATTTTACTGC
ATTTCATTTCAAACGTTAATGTACCGGCAGGTGGATGGTCTGTTAAATA
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