CK739572

Overview
NameCK739572
Unique NameCK739572
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length327
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739572 vs. ExPASy Swiss-Prot
Match: VATE_CITUN (V-type proton ATPase subunit E OS=Citrus unshiu GN=VATE PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 2.103e-53
Identity = 106/108 (98.15%), Postives = 106/108 (98.15%), Query Frame = 3
Query:    3 KKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIGDHQIYLP 326
            KKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEII DH IYLP
Sbjct:   66 KKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLP 173          
BLAST of CK739572 vs. ExPASy Swiss-Prot
Match: VATE_CITLI (V-type proton ATPase subunit E OS=Citrus limon GN=VATE PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 1.363e-52
Identity = 105/108 (97.22%), Postives = 105/108 (97.22%), Query Frame = 3
Query:    3 KKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIGDHQIYLP 326
            KKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLK LIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEII DH IYLP
Sbjct:   66 KKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKDLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLP 173          
BLAST of CK739572 vs. ExPASy Swiss-Prot
Match: VATE_GOSHI (V-type proton ATPase subunit E OS=Gossypium hirsutum GN=VATE PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.258e-39
Identity = 83/108 (76.85%), Postives = 95/108 (87.96%), Query Frame = 3
Query:    3 KKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIGDHQIYLP 326
            KKIEYSMQLNASRIKVLQAQDD+V+ M E+ASK+ LNVS DH+ YK+LLK LIVQSL+RLKEP VLLRCRK+D HLVESVL+SAKEEYA K+ VHPPEII D  ++LP
Sbjct:   66 KKIEYSMQLNASRIKVLQAQDDVVNAMKESASKDFLNVSHDHHVYKRLLKDLIVQSLVRLKEPGVLLRCRKEDLHLVESVLDSAKEEYASKVNVHPPEIIVD-DVHLP 172          
BLAST of CK739572 vs. ExPASy Swiss-Prot
Match: VATE_SPIOL (V-type proton ATPase subunit E OS=Spinacia oleracea GN=VATE PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.760e-37
Identity = 80/108 (74.07%), Postives = 93/108 (86.11%), Query Frame = 3
Query:    3 KKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIGDHQIYLP 326
            +KIEYSMQLNASRIKVLQAQDDLV++M E A+KE+L VS DH+ YK+LLK L+VQSLLRL+EP VLLRCR+DD HLVE VL SAKEEYA+K +VH PEII D  I+LP
Sbjct:   66 RKIEYSMQLNASRIKVLQAQDDLVNSMKEEAAKELLRVSGDHHHYKRLLKELVVQSLLRLREPGVLLRCREDDVHLVEHVLNSAKEEYAEKAEVHTPEIIVD-SIHLP 172          
BLAST of CK739572 vs. ExPASy Swiss-Prot
Match: VATE1_ARATH (V-type proton ATPase subunit E1 OS=Arabidopsis thaliana GN=VHA-E1 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 5.755e-35
Identity = 74/108 (68.52%), Postives = 92/108 (85.19%), Query Frame = 3
Query:    3 KKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIGDHQIYLP 326
            KKI+YSMQLNASRIKVLQAQDD+V+ M + A+K++LNVSRD  +YK+LLK LIVQ LLRLKEP+VLLRCR++D  LVE+VL+ AKEEYA K +VH PE+  D +I+LP
Sbjct:   66 KKIDYSMQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQCLLRLKEPSVLLRCREEDLGLVEAVLDDAKEEYAGKAKVHAPEVAVDTKIFLP 173          
BLAST of CK739572 vs. ExPASy Swiss-Prot
Match: VATE_MESCR (V-type proton ATPase subunit E OS=Mesembryanthemum crystallinum GN=VATE PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.085e-33
Identity = 77/108 (71.30%), Postives = 88/108 (81.48%), Query Frame = 3
Query:    3 KKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIGDHQIYLP 326
            +KIEYSMQLNASRIKVLQAQDDLV+ M EAASKE+L VS DH+ Y+ LLK LIVQSLLRLKEPAVLLRCR++D H V  VL SA+EEY +K  V  PE+I D  I+LP
Sbjct:   66 RKIEYSMQLNASRIKVLQAQDDLVNAMKEAASKELLLVSGDHHQYRNLLKELIVQSLLRLKEPAVLLRCREEDKHHVHRVLHSAREEYGEKACVSHPEVIVD-DIHLP 172          
BLAST of CK739572 vs. ExPASy Swiss-Prot
Match: VATE3_ARATH (V-type proton ATPase subunit E3 OS=Arabidopsis thaliana GN=VHA-E3 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.567e-32
Identity = 73/114 (64.04%), Postives = 89/114 (78.07%), Query Frame = 3
Query:    3 KKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRD------HNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIGDHQIYLP 326
            KKI+YSMQLNASRIKVLQAQDD+V+ M E A+K++L VS+       H+ YK LLK LIVQ LLRLKEPAVLLRCR++D  +VES+L+ A EEY +K +VH PEII D  I+LP
Sbjct:   66 KKIDYSMQLNASRIKVLQAQDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLLKDLIVQCLLRLKEPAVLLRCREEDLDIVESMLDDASEEYCKKAKVHAPEIIVDKDIFLP 179          
BLAST of CK739572 vs. ExPASy Swiss-Prot
Match: VATE2_ARATH (V-type proton ATPase subunit E2 OS=Arabidopsis thaliana GN=VHA-E2 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.327e-31
Identity = 66/108 (61.11%), Postives = 89/108 (82.41%), Query Frame = 3
Query:    3 KKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIGDHQIYLP 326
            K+I+YS QLNASRIK LQAQDD+V+ M ++A+K++L VS D N+YKKLLK LI++SLLRLKEP+VLLRCR+ D  +VESV+E AK +YA+K +V  P+I  D +++LP
Sbjct:   66 KRIDYSTQLNASRIKYLQAQDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLIIESLLRLKEPSVLLRCREMDKKVVESVIEDAKRQYAEKAKVGSPKITIDEKVFLP 173          
BLAST of CK739572 vs. ExPASy Swiss-Prot
Match: VATE1_MOUSE (V-type proton ATPase subunit E 1 OS=Mus musculus GN=Atp6v1e1 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.283e-14
Identity = 42/110 (38.18%), Postives = 70/110 (63.64%), Query Frame = 3
Query:    3 KKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIGDHQIYLP 326
            KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++  D + YLP
Sbjct:   68 KKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKKDV---DVQIDQEAYLP 174          
BLAST of CK739572 vs. ExPASy Swiss-Prot
Match: VATE1_BOVIN (V-type proton ATPase subunit E 1 OS=Bos taurus GN=ATP6V1E1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.283e-14
Identity = 42/110 (38.18%), Postives = 70/110 (63.64%), Query Frame = 3
Query:    3 KKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIGDHQIYLP 326
            KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++  D + YLP
Sbjct:   68 KKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPVYKVATKRDV---DVQIDQEAYLP 174          
The following BLAST results are available for this feature:
BLAST of CK739572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
VATE_CITUN2.103e-5398.15V-type proton ATPase subunit E OS=Citrus unshiu GN... [more]
VATE_CITLI1.363e-5297.22V-type proton ATPase subunit E OS=Citrus limon GN=... [more]
VATE_GOSHI2.258e-3976.85V-type proton ATPase subunit E OS=Gossypium hirsut... [more]
VATE_SPIOL2.760e-3774.07V-type proton ATPase subunit E OS=Spinacia olerace... [more]
VATE1_ARATH5.755e-3568.52V-type proton ATPase subunit E1 OS=Arabidopsis tha... [more]
VATE_MESCR1.085e-3371.30V-type proton ATPase subunit E OS=Mesembryanthemum... [more]
VATE3_ARATH1.567e-3264.04V-type proton ATPase subunit E3 OS=Arabidopsis tha... [more]
VATE2_ARATH1.327e-3161.11V-type proton ATPase subunit E2 OS=Arabidopsis tha... [more]
VATE1_MOUSE3.283e-1438.18V-type proton ATPase subunit E 1 OS=Mus musculus G... [more]
VATE1_BOVIN3.283e-1438.18V-type proton ATPase subunit E 1 OS=Bos taurus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_5959 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739572 ID=CK739572; Name=CK739572; organism=Citrus sinensis; type=EST; length=327bp
GAAAGAAGATTGAGTACTCCATGCAGCTGAATGCTTCTCGGATCAAAGTT
CTTCAAGCTCAGGATGATTTGGTCAGTAATATGATGGAGGCAGCATCAAA
GGAGGTTTTGAATGTGAGTCGAGATCACAATTCATATAAGAAGCTTTTGA
AGGGTCTTATTGTTCAGAGTTTGCTCAGGCTGAAAGAGCCAGCTGTGTTA
CTGAGATGCCGCAAAGATGACCATCATTTGGTGGAGTCTGTTTTGGAGTC
AGCAAAAGAGGAATATGCACAGAAATTGCAGGTTCACCCACCAGAGATAA
TTGGGGATCATCAAATCTATCTTCCGC
back to top