CK739577

Overview
NameCK739577
Unique NameCK739577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length332
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK739577 vs. ExPASy Swiss-Prot
Match: CP21C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial OS=Arabidopsis thaliana GN=CYP21-3 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 7.739e-24
Identity = 57/105 (54.29%), Postives = 75/105 (71.43%), Query Frame = 2 
Query:    2 NYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKSKDSKG-FELYITTAPIPDLNDKLIVFGRVVKGEDVVHEIEEVDTDEHYQPKSDVGIINVTL 313
            ++VIQAG S +  A  +W      R  + TS KHE FM+GT K+K+ +G FE +I +A I DLN+KL VFGRV KG+DVV EIEEV+TD+ YQPKS + I++VTL
Sbjct:  125 HFVIQAGDSAEFDAVKDWALD---RKNIDTSLKHEEFMVGTPKAKNEQGGFEFFIVSAQIKDLNEKLTVFGRVSKGQDVVQEIEEVETDDQYQPKSPIEIMSVTL 226
The following BLAST results are available for this feature:
BLAST of CK739577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CP21C_ARATH7.739e-2454.29Peptidyl-prolyl cis-trans isomerase CYP21-3, mitoc... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_5964 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739577 ID=CK739577; Name=CK739577; organism=Citrus sinensis; type=EST; length=332bp
AAACTATGTCATTCAAGCTGGGCATTCCAAGGATCTTGCAGCTGCTGATG
AATGGACATCAAGAGGGAAGATCCGCAGTCAGCTGAGGACCAGTCCGAAG
CATGAGGCGTTTATGATTGGAACTGTAAAATCTAAAGACAGCAAAGGATT
TGAGCTATACATTACAACTGCACCAATACCAGATTTAAATGATAAGCTTA
TTGTGTTTGGACGAGTAGTGAAGGGTGAGGATGTGGTGCACGAAATTGAA
GAGGTGGATACAGATGAGCACTATCAGCCTAAGTCAGATGTAGGGATCAT
CAATGTGACACTAAAGCATGCAATATGAGGAT
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