CK739578

Overview
NameCK739578
Unique NameCK739578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739578 vs. ExPASy Swiss-Prot
Match: MSBP2_ARATH (Membrane steroid-binding protein 2 OS=Arabidopsis thaliana GN=MSBP2 PE=1 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.067e-64
Identity = 129/167 (77.25%), Postives = 141/167 (84.43%), Query Frame = 3
Query:    3 PAAFFTVVALLWAIYYVLSGMFGSSDNHHQQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSIKSTVPVTDGASSGESTEPKE 503
            PAAFFTV+AL +A+Y V+SG F S + H + RS E + Q EPLPPPVQLGEITEEELK YDGSDSKKPLLMAIK QIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFE++DLTGDISGLG FELEALQDWEYKFMSKYVKVG+I+      DG    ES+EP E
Sbjct:   21 PAAFFTVLALAFAVYQVVSGFFVSPEVH-RPRSLEVQPQSEPLPPPVQLGEITEEELKLYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEDQDLTGDISGLGAFELEALQDWEYKFMSKYVKVGTIQK----KDGEGK-ESSEPSE 181          
BLAST of CK739578 vs. ExPASy Swiss-Prot
Match: MSBP1_ARATH (Membrane steroid-binding protein 1 OS=Arabidopsis thaliana GN=MSBP1 PE=1 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 9.351e-61
Identity = 125/187 (66.84%), Postives = 140/187 (74.87%), Query Frame = 3
Query:    3 PAAFFTVVALLWAIYYVLSGMFGS---SDNHHQQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSIKSTVPVTDGASSGESTEPKE---GVVDTPAESKGVVD 545
            P  FFT +AL +AIY V+SG F S     N HQ+     +E+  P+P PVQ+GEITEEELKQYDGSD +KPLLMAIK QIYDV+QSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLT D+SGLGPFEL+ALQDWEYKFMSKY KVG++K      + AS  E TE  E    V  TP   K VVD
Sbjct:   21 PVVFFTALALAFAIYQVISGWFASPFDDVNRHQRARSLAQEEEPPIPQPVQVGEITEEELKQYDGSDPQKPLLMAIKHQIYDVTQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTWDVSGLGPFELDALQDWEYKFMSKYAKVGTVKVAGSEPETASVSEPTENVEQDAHVTTTP--GKTVVD 205          
BLAST of CK739578 vs. ExPASy Swiss-Prot
Match: SBP3_ARATH (Probable steroid-binding protein 3 OS=Arabidopsis thaliana GN=MP3 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.036e-23
Identity = 50/99 (50.51%), Postives = 69/99 (69.70%), Query Frame = 3
Query:  153 EITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSIKS 449
            E T E+L QY+G+D  KP+ +AIK +++DV+  + FYG GG Y++FAGKDASRAL KMS  E+D++  + GL   E+  L DWE KF +KY  VG + S
Sbjct:    2 EFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKNEEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVVS 100          
BLAST of CK739578 vs. ExPASy Swiss-Prot
Match: NENF_RAT (Neudesin OS=Rattus norvegicus GN=Nenf PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.366e-19
Identity = 52/114 (45.61%), Postives = 71/114 (62.28%), Query Frame = 3
Query:  135 PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQD-WEYKFMSKYVKVGSIKSTVPVTDGA 473
            PPV+L   TEEEL +Y G +  +P+ +A+K  ++DV+  + FYG G PY   AGKD+SR +AKMS +  DLT DISGL   ELEAL D +   + +KY  VG     +   DG+
Sbjct:   41 PPVRL--FTEEELARYSGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDPADLTHDISGLTAKELEALDDIFSKVYKAKYPIVGYTARRILNEDGS 152          
BLAST of CK739578 vs. ExPASy Swiss-Prot
Match: NENF_MOUSE (Neudesin OS=Mus musculus GN=Nenf PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.510e-18
Identity = 50/114 (43.86%), Postives = 70/114 (61.40%), Query Frame = 3
Query:  135 PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQD-WEYKFMSKYVKVGSIKSTVPVTDGA 473
            PPV+L   TEEEL +Y G +  +P+ +A+K  ++DV+  + FYG G PY   AGKD+SR +AKMS +  DLT D +GL   ELEAL D +   + +KY  VG     +   DG+
Sbjct:   41 PPVRL--FTEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDPADLTHDTTGLTAKELEALDDVFSKVYKAKYPIVGYTARRILNEDGS 152          
BLAST of CK739578 vs. ExPASy Swiss-Prot
Match: PGRC1_RAT (Membrane-associated progesterone receptor component 1 OS=Rattus norvegicus GN=Pgrmc1 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 9.789e-18
Identity = 48/111 (43.24%), Postives = 69/111 (62.16%), Query Frame = 3
Query:  123 EPLP-PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSI 443
            EP P P ++  + T  EL++YDG    + +LMAI  +++DV++ R FYGP GPY +FAG+DASR LA    ++   KD   D+S L P + E L DW+ +F  KY  VG +
Sbjct:   61 EPPPLPRLKPRDFTPAELRRYDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLNDWDSQFTFKYHHVGKL 170          
BLAST of CK739578 vs. ExPASy Swiss-Prot
Match: NENF_BOVIN (Neudesin OS=Bos taurus GN=NENF PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.279e-17
Identity = 48/114 (42.11%), Postives = 69/114 (60.53%), Query Frame = 3
Query:  135 PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQD-WEYKFMSKYVKVGSIKSTVPVTDGA 473
            PPV+L   TEEEL +Y G +  +P+ MA+K  ++DV+  + FYG G PY    GKD++R +AKMS +  DLT D +GL   ELE+L D +   + +KY  VG     +   DG+
Sbjct:   39 PPVRL--FTEEELARYGGEEEDQPIYMAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAKMSLDPADLTHDTTGLTAEELESLDDVFTRVYKAKYPIVGYTARRILNEDGS 150          
BLAST of CK739578 vs. ExPASy Swiss-Prot
Match: PGRC1_PIG (Membrane-associated progesterone receptor component 1 OS=Sus scrofa GN=PGRMC1 PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 1.670e-17
Identity = 46/121 (38.02%), Postives = 72/121 (59.50%), Query Frame = 3
Query:   90 QQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSI 443
            Q  + + ++   P  P ++  + T  EL+++DG    + +LMAI  +++DV++ R FYGP GPY +FAG+DASR LA    ++   KD   D+S L P + E L DW+ +F  KY  VG +
Sbjct:   50 QPAASDSDDDEPPPLPRLKRRDFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLNDWDSQFTFKYHHVGKL 169          
BLAST of CK739578 vs. ExPASy Swiss-Prot
Match: PGRC1_BOVIN (Membrane-associated progesterone receptor component 1 OS=Bos taurus GN=PGRMC1 PE=2 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 1.670e-17
Identity = 46/121 (38.02%), Postives = 72/121 (59.50%), Query Frame = 3
Query:   90 QQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSI 443
            Q  + + ++   P  P ++  + T  EL+++DG    + +LMAI  +++DV++ R FYGP GPY +FAG+DASR LA    ++   KD   D+S L P + E L DW+ +F  KY  VG +
Sbjct:   50 QPAASDSDDDEPPPLPRLKRRDFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLSDWDSQFTFKYHHVGKL 169          
BLAST of CK739578 vs. ExPASy Swiss-Prot
Match: PGRC1_MOUSE (Membrane-associated progesterone receptor component 1 OS=Mus musculus GN=Pgrmc1 PE=1 SV=4)

HSP 1 Score: 88.5817 bits (218), Expect = 2.181e-17
Identity = 47/111 (42.34%), Postives = 69/111 (62.16%), Query Frame = 3
Query:  123 EPLP-PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSI 443
            EP P P ++  + T  EL+++DG    + +LMAI  +++DV++ R FYGP GPY +FAG+DASR LA    ++   KD   D+S L P + E L DW+ +F  KY  VG +
Sbjct:   61 EPPPLPRLKRRDFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLSDWDSQFTFKYHHVGKL 170          
The following BLAST results are available for this feature:
BLAST of CK739578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
MSBP2_ARATH1.067e-6477.25Membrane steroid-binding protein 2 OS=Arabidopsis ... [more]
MSBP1_ARATH9.351e-6166.84Membrane steroid-binding protein 1 OS=Arabidopsis ... [more]
SBP3_ARATH2.036e-2350.51Probable steroid-binding protein 3 OS=Arabidopsis ... [more]
NENF_RAT1.366e-1945.61Neudesin OS=Rattus norvegicus GN=Nenf PE=2 SV=1[more]
NENF_MOUSE1.510e-1843.86Neudesin OS=Mus musculus GN=Nenf PE=1 SV=1[more]
PGRC1_RAT9.789e-1843.24Membrane-associated progesterone receptor componen... [more]
NENF_BOVIN1.279e-1742.11Neudesin OS=Bos taurus GN=NENF PE=2 SV=1[more]
PGRC1_PIG1.670e-1738.02Membrane-associated progesterone receptor componen... [more]
PGRC1_BOVIN1.670e-1738.02Membrane-associated progesterone receptor componen... [more]
PGRC1_MOUSE2.181e-1742.34Membrane-associated progesterone receptor componen... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5965 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739578 ID=CK739578; Name=CK739578; organism=Citrus sinensis; type=EST; length=551bp
CCCCGGCGGCGTTTTTTACAGTTGTTGCGTTGCTGTGGGCCATATACTAT
GTTCTGTCGGGAATGTTTGGTTCGTCCGATAATCATCATCAGCAGAGATC
GAGGGAGTACGAGGAACAGATGGAGCCTCTGCCACCGCCTGTTCAGCTAG
GCGAGATTACCGAGGAGGAGCTCAAACAGTACGATGGCTCCGATTCCAAA
AAGCCCCTTCTCATGGCCATCAAGAGCCAGATCTACGATGTCTCTCAGAG
CAGGATGTTTTATGGACCTGGTGGGCCATATGCGTTGTTTGCTGGAAAGG
ATGCTAGCAGGGCCCTTGCCAAGATGTCTTTTGAGGAAAAAGATTTAACT
GGTGATATCTCTGGTCTTGGTCCATTTGAGTTGGAGGCATTGCAGGACTG
GGAGTATAAGTTCATGAGCAAGTATGTTAAGGTTGGATCTATCAAGTCGA
CAGTTCCAGTAACAGATGGAGCCTCCTCTGGTGAATCCACTGAGCCTAAA
GAAGGAGTTGTTGATACACCTGCAGAAAGTAAAGGAGTTGTTGATACACC
T
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