CK739581

Overview
NameCK739581
Unique NameCK739581
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length561
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739581 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 228.794 bits (582), Expect = 1.406e-59
Identity = 120/186 (64.52%), Postives = 123/186 (66.13%), Query Frame = 2
Query:    2 NADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSK 559
            NADAY  DEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ                  NIVPTST                 NGIALRVPTPN          SKKTFAEEVNAAFR+SA+ ELKGIL VCDEPLVSVDFRC              MGDDMVKVIAWYDNEWGYS+
Sbjct:  197 NADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQ 382          
BLAST of CK739581 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 4.522e-58
Identity = 117/186 (62.90%), Postives = 120/186 (64.52%), Query Frame = 2
Query:    2 NADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSK 559
            NAD Y PDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ                  NIVPTST                   + LRVPTPN          SKKTFAEEVNAAFRE+AD ELKGIL VCDEPLVSVDFRC              MGDDMVKVIAWYDNEWGYS+
Sbjct:  193 NADLYNPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALSSQALRGSSMALPLRVPTPNVSVVDLVVQVSKKTFAEEVNAAFREAADKELKGILDVCDEPLVSVDFRCSDVSSTVDASLTMVMGDDMVKVIAWYDNEWGYSQ 378          
BLAST of CK739581 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 1.316e-57
Identity = 117/186 (62.90%), Postives = 121/186 (65.05%), Query Frame = 2
Query:    2 NADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSK 559
            N + Y   + IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ                  NIVPTST                 NGIALRVPTPN          SKKTFAEEVNAAFRESADNELKGILSVCDEPLVS+DFRC              MGDDMVKVIAWYDNEWGYS+
Sbjct:  202 NEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQ 387          
BLAST of CK739581 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 8.528e-57
Identity = 115/186 (61.83%), Postives = 119/186 (63.98%), Query Frame = 2
Query:    2 NADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSK 559
            NAD Y PDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ                  NIVPTST                 NGIALRVPTPN          SKKT AEEVN AFR++A NEL GIL VCD PLVSVDFRC              MGDDMVKVI+WYDNEWGYS+
Sbjct:  204 NADQYNPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTLAEEVNQAFRDAAANELTGILEVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVISWYDNEWGYSQ 389          
BLAST of CK739581 vs. ExPASy Swiss-Prot
Match: G3PA_SINAL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Sinapis alba GN=GAPA PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 1.900e-56
Identity = 114/186 (61.29%), Postives = 121/186 (65.05%), Query Frame = 2
Query:    2 NADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSK 559
            NA+ Y  ++ IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ                  NIVPTST                 NGIALRVPTPN          SKKTFAEEVNAAFR++A+ ELKGIL VCDEPLVSVDFRC              MGDDMVKVIAWYDNEWGYS+
Sbjct:   34 NAELYSHEDTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDAAEKELKGILDVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQ 219          
BLAST of CK739581 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 5.528e-56
Identity = 116/186 (62.37%), Postives = 119/186 (63.98%), Query Frame = 2
Query:    2 NADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSK 559
            NADAY   + IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ                  NIVPTST                 NGIALRVPTPN          SKKTFAEEVN AFRESA  EL GILSVCDEPLVSVDFRC              MGDD+VKVIAWYDNEWGYS+
Sbjct:  206 NADAYTHADDIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPTLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNEAFRESAAKELTGILSVCDEPLVSVDFRCTDVSSTVDSSLTMVMGDDLVKVIAWYDNEWGYSQ 391          
BLAST of CK739581 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.193e-50
Identity = 103/186 (55.38%), Postives = 115/186 (61.83%), Query Frame = 2
Query:    2 NADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSK 559
            N   YK + PIISNASCTTNCLAPFVKVL+QKFGI+KGTMTTTHSYTGDQ                  NIVPT+T                 NGIALRVPTP            KKTFAEEVNAAFRE+A+  +KG+L V D PLVS+DF+C              MGDDMVKV+AWYDNEWGYS+
Sbjct:  174 NEGDYKHEYPIISNASCTTNCLAPFVKVLEQKFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTTTGAAKAVSLVLPSLKGKLNGIALRVPTPTVSVVDLVVQVEKKTFAEEVNAAFREAANGPMKGVLHVEDAPLVSIDFKCTDQSTSIDASLTMVMGDDMVKVVAWYDNEWGYSQ 359          
BLAST of CK739581 vs. ExPASy Swiss-Prot
Match: G3PA_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Scenedesmus vacuolatus GN=GapA PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 1.904e-48
Identity = 100/183 (54.64%), Postives = 110/183 (60.11%), Query Frame = 2
Query:    2 NADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWG 550
            NA  YK  + IISNASCTTNCLAPFVKVLD+KFGI+KGTMT THSYTGDQ                  NIVPT+T                 NGIALRVPTPN           KKTFAEE+N AF+E+A   L G+L+V DEPLVSVDFRC              MG DMVKV+AWYDNEWG
Sbjct:  132 NAHDYKHSDAIISNASCTTNCLAPFVKVLDEKFGIVKGTMTNTHSYTGDQRLLDASHRDLRRARAAALNIVPTTTGAAKAVALVLPKLKGKLNGIALRVPTPNVSVVDLVVQVEKKTFAEEINNAFKEAAAGSLNGVLAVSDEPLVSVDFRCTDVSSTIDSSLTMVMGADMVKVVAWYDNEWG 314          
BLAST of CK739581 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.487e-48
Identity = 100/177 (56.50%), Postives = 112/177 (63.28%), Query Frame = 2
Query:   32 IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTF-AEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSK 559
            IISNASCTTNCLAPFVKV+D++ GI+KGTMTTTHSYTGDQ                  NIVPTST                 NGIALRVPTPN          +KK   AE+VNAAFR++AD  LKG+L+VCDEPLVSVDFRC              MGDDMVKV+AWYDNEWGYS+
Sbjct:  202 IISNASCTTNCLAPFVKVMDEELGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVAKKGITAEDVNAAFRKAADGPLKGVLAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQ 378          
BLAST of CK739581 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 1.612e-47
Identity = 100/177 (56.50%), Postives = 110/177 (62.15%), Query Frame = 2
Query:   32 IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTF-AEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSK 559
            IISNASCTTNCLAPF KVLD++FGI+KGTMTTTHSYTGDQ                  NIVPTST                 NGIALRVPTPN          +KK   AE+VNAAFR++A+  LKGIL VCD PLVSVDFRC              MGDDMVKV+AWYDNEWGYS+
Sbjct:  233 IISNASCTTNCLAPFAKVLDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVAKKGISAEDVNAAFRKAAEGPLKGILDVCDVPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQ 409          
The following BLAST results are available for this feature:
BLAST of CK739581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3PA_ARATH1.406e-5964.52Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_TOBAC4.522e-5862.90Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SPIOL1.316e-5762.90Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_MAIZE8.528e-5761.83Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SINAL1.900e-5661.29Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_PEA5.528e-5662.37Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_CHLRE1.193e-5055.38Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SCEVA1.904e-4854.64Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PB_TOBAC2.487e-4856.50Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_PEA1.612e-4756.50Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5968 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739581 ID=CK739581; Name=CK739581; organism=Citrus sinensis; type=EST; length=561bp
CAATGCGGATGCTTACAAGCCAGATGAGCCCATCATCAGCAATGCTTCTT
GCACAACCAACTGCCTTGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTT
GGCATTATCAAGGGAACCATGACCACCACACACTCGTACACTGGCGACCA
AAGGCTACTCGATGCTAGCCACCGTGACCTCAGGCGTGCAAGAGCAGCTG
CACTCAACATTGTCCCAACATCAACTGGTGCGGCAAAAGCTGTGGCCCTT
GTCCTCCCAGCACTCAAAGGCAAACTAAACGGCATTGCCCTTCGTGTGCC
AACACCAAACGTCTCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAAA
CCTTCGCAGAAGAGGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGAA
CTGAAAGGGATCCTCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACTT
CAGGTGCTCTGATGTATCCTCAACCGTTGATTCATCTCTCACACTTGTCA
TGGGAGACGACATGGTTAAGGTGATTGCATGGTATGACAATGAATGGGGT
TACTCTAAAGG
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