CK739612

Overview
NameCK739612
Unique NameCK739612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739612 vs. ExPASy Swiss-Prot
Match: 6PGD_STAES (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gnd PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.065e-24
Identity = 48/87 (55.17%), Postives = 63/87 (72.41%), Query Frame = 3 
Query:  132 DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVD 392
            DK+  ++ +R+ALY SKICSYAQG   +R  S +  W+LKLGELA IW+ GCIIRA FL +IK AYD N +L NLL+DP F   +++
Sbjct:  312 DKKTFLEKIRKALYMSKICSYAQGFAQMRKASEDNEWNLKLGELAMIWREGCIIRAQFLQKIKDAYDNNENLQNLLLDPYFKNIVME 398

HSP 2 Score: 29.261 bits (64), Expect = 2.065e-24
Identity = 14/24 (58.33%), Postives = 18/24 (75.00%), Query Frame = 2 
Query:   20 IASSLDARFLSGLKEERVEACQSL 91
            I  S+ ARF+S +KEERV A +SL
Sbjct:  279 ITESVFARFISSIKEERVTASKSL 302
[Close]
BLAST of CK739612 vs. ExPASy Swiss-Prot
Match: 6PGD_STAEQ (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gnd PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.065e-24
Identity = 48/87 (55.17%), Postives = 63/87 (72.41%), Query Frame = 3 
Query:  132 DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVD 392
            DK+  ++ +R+ALY SKICSYAQG   +R  S +  W+LKLGELA IW+ GCIIRA FL +IK AYD N +L NLL+DP F   +++
Sbjct:  312 DKKTFLEKIRKALYMSKICSYAQGFAQMRKASEDNEWNLKLGELAMIWREGCIIRAQFLQKIKDAYDNNENLQNLLLDPYFKNIVME 398

HSP 2 Score: 29.261 bits (64), Expect = 2.065e-24
Identity = 14/24 (58.33%), Postives = 18/24 (75.00%), Query Frame = 2 
Query:   20 IASSLDARFLSGLKEERVEACQSL 91
            I  S+ ARF+S +KEERV A +SL
Sbjct:  279 ITESVFARFISSIKEERVTASKSL 302
[Close]
BLAST of CK739612 vs. ExPASy Swiss-Prot
Match: 6PGD2_BACSU (6-phosphogluconate dehydrogenase, decarboxylating 2 OS=Bacillus subtilis GN=yqjI PE=1 SV=4)

HSP 1 Score: 101.293 bits (251), Expect = 2.687e-24
Identity = 51/87 (58.62%), Postives = 67/87 (77.01%), Query Frame = 3 
Query:  132 DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVD 392
            +K++LI+ VR+AL+ SKICSYAQG   ++A S E  WDLK GE+A I++GGCIIRA FL +IK+AYDR  +L NLL+D  F K IV+
Sbjct:  314 NKEELIEAVRKALFMSKICSYAQGFAQMKAASEEYNWDLKYGEIAMIFRGGCIIRAAFLQKIKEAYDREPELDNLLLDSYF-KNIVE 399

HSP 2 Score: 30.0314 bits (66), Expect = 2.687e-24
Identity = 14/25 (56.00%), Postives = 18/25 (72.00%), Query Frame = 2 
Query:    5 VAAPTIASSLDARFLSGLKEERVEA 79
            V  P I  S+ ARF+S +KEERV+A
Sbjct:  275 VPLPIITESVFARFISAMKEERVKA 299
[Close]
BLAST of CK739612 vs. ExPASy Swiss-Prot
Match: 6PGD_SYNE7 (6-phosphogluconate dehydrogenase, decarboxylating OS=Synechococcus elongatus (strain PCC 7942) GN=gnd PE=1 SV=4)

HSP 1 Score: 109.383 bits (272), Expect = 5.882e-24
Identity = 55/87 (63.22%), Postives = 65/87 (74.71%), Query Frame = 3 
Query:  132 DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVD 392
            D+Q  ID VR ALY SKICSYAQGM L+   S    + L LGELARIWKGGCIIRA FL++IK+AYD +  LANLL+ PEF + I+D
Sbjct:  317 DRQAFIDSVRDALYCSKICSYAQGMALLAKASQVYNYGLNLGELARIWKGGCIIRAGFLNKIKQAYDADPTLANLLLAPEFRQTILD 403
[Close]
BLAST of CK739612 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAW (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain MW2) GN=gnd PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.210e-23
Identity = 50/86 (58.14%), Postives = 62/86 (72.09%), Query Frame = 3 
Query:  132 DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIV 389
            DK+  ++ +R+ALY SKICSYAQG   +R  S +  W+LKLG+LA IW+ GCIIRA FL +IK AYD N  L NLL+DP F K IV
Sbjct:  312 DKKDFLEKIRKALYMSKICSYAQGFAQMRKASEDNEWNLKLGDLAMIWREGCIIRAQFLQKIKDAYDNNPGLQNLLLDPYF-KNIV 396

HSP 2 Score: 28.1054 bits (61), Expect = 2.210e-23
Identity = 13/24 (54.17%), Postives = 17/24 (70.83%), Query Frame = 2 
Query:   20 IASSLDARFLSGLKEERVEACQSL 91
            I  S+ ARF+S +KEERV A + L
Sbjct:  279 ITESVFARFISSIKEERVNASKEL 302
[Close]
BLAST of CK739612 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAS (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain MSSA476) GN=gnd PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.210e-23
Identity = 50/86 (58.14%), Postives = 62/86 (72.09%), Query Frame = 3 
Query:  132 DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIV 389
            DK+  ++ +R+ALY SKICSYAQG   +R  S +  W+LKLG+LA IW+ GCIIRA FL +IK AYD N  L NLL+DP F K IV
Sbjct:  312 DKKDFLEKIRKALYMSKICSYAQGFAQMRKASEDNEWNLKLGDLAMIWREGCIIRAQFLQKIKDAYDNNPGLQNLLLDPYF-KNIV 396

HSP 2 Score: 28.1054 bits (61), Expect = 2.210e-23
Identity = 13/24 (54.17%), Postives = 17/24 (70.83%), Query Frame = 2 
Query:   20 IASSLDARFLSGLKEERVEACQSL 91
            I  S+ ARF+S +KEERV A + L
Sbjct:  279 ITESVFARFISSIKEERVNASKEL 302
[Close]
BLAST of CK739612 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAR (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain MRSA252) GN=gnd PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.210e-23
Identity = 50/86 (58.14%), Postives = 62/86 (72.09%), Query Frame = 3 
Query:  132 DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIV 389
            DK+  ++ +R+ALY SKICSYAQG   +R  S +  W+LKLG+LA IW+ GCIIRA FL +IK AYD N  L NLL+DP F K IV
Sbjct:  312 DKKDFLEKIRKALYMSKICSYAQGFAQMRKASEDNEWNLKLGDLAMIWREGCIIRAQFLQKIKDAYDNNPGLQNLLLDPYF-KNIV 396

HSP 2 Score: 28.1054 bits (61), Expect = 2.210e-23
Identity = 13/24 (54.17%), Postives = 17/24 (70.83%), Query Frame = 2 
Query:   20 IASSLDARFLSGLKEERVEACQSL 91
            I  S+ ARF+S +KEERV A + L
Sbjct:  279 ITESVFARFISSIKEERVNASKEL 302
[Close]
BLAST of CK739612 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAN (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain N315) GN=gnd PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.210e-23
Identity = 50/86 (58.14%), Postives = 62/86 (72.09%), Query Frame = 3 
Query:  132 DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIV 389
            DK+  ++ +R+ALY SKICSYAQG   +R  S +  W+LKLG+LA IW+ GCIIRA FL +IK AYD N  L NLL+DP F K IV
Sbjct:  312 DKKDFLEKIRKALYMSKICSYAQGFAQMRKASEDNEWNLKLGDLAMIWREGCIIRAQFLQKIKDAYDNNPGLQNLLLDPYF-KNIV 396

HSP 2 Score: 28.1054 bits (61), Expect = 2.210e-23
Identity = 13/24 (54.17%), Postives = 17/24 (70.83%), Query Frame = 2 
Query:   20 IASSLDARFLSGLKEERVEACQSL 91
            I  S+ ARF+S +KEERV A + L
Sbjct:  279 ITESVFARFISSIKEERVNASKEL 302
[Close]
BLAST of CK739612 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAM (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gnd PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.210e-23
Identity = 50/86 (58.14%), Postives = 62/86 (72.09%), Query Frame = 3 
Query:  132 DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIV 389
            DK+  ++ +R+ALY SKICSYAQG   +R  S +  W+LKLG+LA IW+ GCIIRA FL +IK AYD N  L NLL+DP F K IV
Sbjct:  312 DKKDFLEKIRKALYMSKICSYAQGFAQMRKASEDNEWNLKLGDLAMIWREGCIIRAQFLQKIKDAYDNNPGLQNLLLDPYF-KNIV 396

HSP 2 Score: 28.1054 bits (61), Expect = 2.210e-23
Identity = 13/24 (54.17%), Postives = 17/24 (70.83%), Query Frame = 2 
Query:   20 IASSLDARFLSGLKEERVEACQSL 91
            I  S+ ARF+S +KEERV A + L
Sbjct:  279 ITESVFARFISSIKEERVNASKEL 302
[Close]
BLAST of CK739612 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAC (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain COL) GN=gnd PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.210e-23
Identity = 50/86 (58.14%), Postives = 62/86 (72.09%), Query Frame = 3 
Query:  132 DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIV 389
            DK+  ++ +R+ALY SKICSYAQG   +R  S +  W+LKLG+LA IW+ GCIIRA FL +IK AYD N  L NLL+DP F K IV
Sbjct:  312 DKKDFLEKIRKALYMSKICSYAQGFAQMRKASEDNEWNLKLGDLAMIWREGCIIRAQFLQKIKDAYDNNPGLQNLLLDPYF-KNIV 396

HSP 2 Score: 28.1054 bits (61), Expect = 2.210e-23
Identity = 13/24 (54.17%), Postives = 17/24 (70.83%), Query Frame = 2 
Query:   20 IASSLDARFLSGLKEERVEACQSL 91
            I  S+ ARF+S +KEERV A + L
Sbjct:  279 ITESVFARFISSIKEERVNASKEL 302
The following BLAST results are available for this feature:
BLAST of CK739612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
6PGD_STAES2.065e-2455.176-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAEQ2.065e-2455.176-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD2_BACSU2.687e-2458.626-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SYNE75.882e-2463.226-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAAW2.210e-2358.146-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAAS2.210e-2358.146-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAAR2.210e-2358.146-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAAN2.210e-2358.146-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAAM2.210e-2358.146-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAAC2.210e-2358.146-phosphogluconate dehydrogenase, decarboxylating ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_5999 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739612 ID=CK739612; Name=CK739612; organism=Citrus sinensis; type=EST; length=394bp
ATCAGTTGCAGCTCCCACTATTGCATCTTCTTTGGATGCAAGGTTCCTTA
GTGGTTTAAAGGAAGAAAGAGTTGAAGCCTGCCAAAGTCTTTAAATCAGG
TGGCTTTGGTGTTCAGTCTAACCAAGCTGTGGACAAGCAAAAGTTGATTG
ATGATGTGAGGCAGGCTCTTTATGCATCCAAGATATGTAGTTACGCACAG
GGGATGAATCTTATTCGTGCAAAGAGTATTGAAAAAGGATGGGACTTGAA
GTTGGGGGAACTGGCTAGGATTTGGAAGGGGGGTTGCATTATCCGTGCTG
TGTTCCTTGACAGAATCAAGAAGGCATACGATAGGAATGCTGATCTGGCA
AACCTTCTTGTGGACCCTGAGTTTGCAAAGGAAATTGTTGATAG
back to top