CK739641

Overview
NameCK739641
Unique NameCK739641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739641 vs. ExPASy Swiss-Prot
Match: GLGB_ORYSJ (1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SBE1 PE=1 SV=2)

HSP 1 Score: 320.472 bits (820), Expect = 4.354e-87
Identity = 144/178 (80.90%), Postives = 162/178 (91.01%), Query Frame = 1
Query:    1 GYLNFMGNEFGHPEWIDFPREGNEWSYEKCRRQWNLVDADHLRYKFMNAFDRAMNELDDKFPFLASTKQIVSSTNEEDKVIVFERGDLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFRGDGRVGHNIDHFTSPEGIPGVAETNFNNRPNSFRVLSPPRTSVVYYRVEEAKK 534
            GYLNFMGNEFGHPEWIDFPREGN WSY+KCRRQW+LVD DHLRYK+MNAFD+AMN L+++F FL+S+KQIVS  NE+DKVIVFERGDLVFVFNFHP  TY+GYKVGCDLPGKYRVALDSDA  F G GRVGH++DHFTSPEG+PGV ETNFNNRPNSF+VLSPPRT V YYRV+E ++
Sbjct:  586 GYLNFMGNEFGHPEWIDFPREGNNWSYDKCRRQWSLVDTDHLRYKYMNAFDQAMNALEEEFSFLSSSKQIVSDMNEKDKVIVFERGDLVFVFNFHPNKTYKGYKVGCDLPGKYRVALDSDALVFGGHGRVGHDVDHFTSPEGMPGVPETNFNNRPNSFKVLSPPRTCVAYYRVDEDRE 763          
BLAST of CK739641 vs. ExPASy Swiss-Prot
Match: GLGB_SOLTU (1,4-alpha-glucan-branching enzyme OS=Solanum tuberosum GN=SBE1 PE=2 SV=2)

HSP 1 Score: 292.738 bits (748), Expect = 9.723e-79
Identity = 130/154 (84.42%), Postives = 142/154 (92.21%), Query Frame = 1
Query:    1 GYLNFMGNEFGHPEWIDFPREGNEWSYEKCRRQWNLVDADHLRYKFMNAFDRAMNELDDKFPFLASTKQIVSSTNEEDKVIVFERGDLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFRGDGRVGHNIDHFTSPEGIPGVAETNFNNR 462
            GYLNFMGNEFGHPEWIDFPREGN WSY+KCRRQWNL D++HLRYKFMNAFDRAMN LD+KF FLAS KQIVSS ++++KV+VFERGDLVFVFNFHP+NTYEGYKVGCDLPGKYRVALDSDAW F G GR GH++DHFTSPEGIPGV ETNFN R
Sbjct:  606 GYLNFMGNEFGHPEWIDFPREGNNWSYDKCRRQWNLADSEHLRYKFMNAFDRAMNSLDEKFSFLASGKQIVSSMDDDNKVVVFERGDLVFVFNFHPKNTYEGYKVGCDLPGKYRVALDSDAWEFGGHGRTGHDVDHFTSPEGIPGVPETNFNGR 759          
BLAST of CK739641 vs. ExPASy Swiss-Prot
Match: GLGB_MAIZE (1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic OS=Zea mays GN=SBE1 PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.257e-50
Identity = 101/185 (54.59%), Postives = 123/185 (66.49%), Query Frame = 1
Query:    1 GYLNFMGNEFGHPEWIDFPR-----------EGNEWSYEKCRRQWNLVDADHLRYKFMNAFDRAMNELDDKFPFLASTKQIVSSTNEEDKVIVFERGDLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFRGDGRVGHNIDHFTSPEGIPGVAETNFNNRPNSFRVLSPPRTSVVYYRVE 522
            GYLNFMGNEFGHPEWIDFPR            GN  SY+KCRR+++L DAD+LRY  M  FD+AM  L+ K+ F+ S  Q +S  +EEDKVIVFE+GDLVFVFNFH  N+Y  Y++GC  PG Y+V LDSDA  F G  R+ H  +HFT        A+ + +NRP SF V +P RT VVY  VE
Sbjct:  623 GYLNFMGNEFGHPEWIDFPRGPQRLPSGKFIPGNNNSYDKCRRRFDLGDADYLRYHGMQEFDQAMQHLEQKYEFMTSDHQYISRKHEEDKVIVFEKGDLVFVFNFHCNNSYFDYRIGCRKPGVYKVVLDSDAGLFGGFSRIHHAAEHFT--------ADCSHDNRPYSFSVYTPSRTCVVYAPVE 799          
BLAST of CK739641 vs. ExPASy Swiss-Prot
Match: GLGB_HORSE (1,4-alpha-glucan-branching enzyme OS=Equus caballus GN=GBE1 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.157e-45
Identity = 86/174 (49.43%), Postives = 116/174 (66.67%), Query Frame = 1
Query:    1 GYLNFMGNEFGHPEWIDFPREGNEWSYEKCRRQWNLVDADHLRYKFMNAFDRAMNELDDKFPFLASTKQIVSSTNEEDKVIVFERGDLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFRGDGRVGHNIDHFTSPEGIPGVAETNFNNRPNSFRVLSPPRTSVVYYRVE 522
            GYLNFMGNEFGHPEW+DFPR+GN  SY   RRQ++L D D LRYKF+N FDR MN+L+++  +L++ +  VS  +E +KVI FER  L+F+FNFHP  +Y  Y+VG  LPGK+++ LDSDA  + G  R+ HN D F+ P           N RP+S  V  P R +++   V+
Sbjct:  531 GYLNFMGNEFGHPEWLDFPRKGNNESYHYARRQFHLTDDDLLRYKFLNNFDRDMNKLEERCGWLSAPQAFVSEKHEGNKVIAFERAALLFIFNFHPSKSYTNYRVGTTLPGKFKIVLDSDAAEYGGHQRLDHNTDFFSEP--------YEHNERPSSLLVYIPSRVALILQNVD 696          
BLAST of CK739641 vs. ExPASy Swiss-Prot
Match: GLGB_HUMAN (1,4-alpha-glucan-branching enzyme OS=Homo sapiens GN=GBE1 PE=1 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 7.776e-44
Identity = 84/174 (48.28%), Postives = 114/174 (65.52%), Query Frame = 1
Query:    1 GYLNFMGNEFGHPEWIDFPREGNEWSYEKCRRQWNLVDADHLRYKFMNAFDRAMNELDDKFPFLASTKQIVSSTNEEDKVIVFERGDLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFRGDGRVGHNIDHFTSPEGIPGVAETNFNNRPNSFRVLSPPRTSVVYYRVE 522
            GYLNFMGNEFGHPEW+DFPR+GN  SY   RRQ++L D D LRYKF+N FDR MN L++++ +LA+ +  VS  +E +K+I FER  L+F+FNFHP  +Y  Y+VG  LPGK+++ LDSDA  + G  R+ H+ D F+             N RP S  V  P R +++   V+
Sbjct:  534 GYLNFMGNEFGHPEWLDFPRKGNNESYHYARRQFHLTDDDLLRYKFLNNFDRDMNRLEERYGWLAAPQAYVSEKHEGNKIIAFERAGLLFIFNFHPSKSYTDYRVGTALPGKFKIVLDSDAAEYGGHQRLDHSTDFFSE--------AFEHNGRPYSLLVYIPSRVALILQNVD 699          
BLAST of CK739641 vs. ExPASy Swiss-Prot
Match: GLGB_FELCA (1,4-alpha-glucan-branching enzyme OS=Felis catus GN=GBE1 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.016e-43
Identity = 84/174 (48.28%), Postives = 114/174 (65.52%), Query Frame = 1
Query:    1 GYLNFMGNEFGHPEWIDFPREGNEWSYEKCRRQWNLVDADHLRYKFMNAFDRAMNELDDKFPFLASTKQIVSSTNEEDKVIVFERGDLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFRGDGRVGHNIDHFTSPEGIPGVAETNFNNRPNSFRVLSPPRTSVVYYRVE 522
            GYLNFMGNEFGHPEW+DFPR+GN  SY   RRQ++L D D LRYKF+N FDR MN+L+++  +L++ +  VS  +E +K+I FER  LVF+FNFHP  +Y  Y+VG  LPGK+R+ LD+DA  + G  R+ H+ + F+ P           N RP S  V  P R  ++   V+
Sbjct:  531 GYLNFMGNEFGHPEWLDFPRKGNNESYHYARRQFHLTDDDLLRYKFLNNFDRDMNKLEERCGWLSAPQAFVSEKHEGNKIIAFERAGLVFIFNFHPSKSYTDYRVGTTLPGKFRIVLDTDAAEYGGHQRLDHSTEFFSQP--------FKHNERPCSLLVYIPNRVGLILQNVD 696          
BLAST of CK739641 vs. ExPASy Swiss-Prot
Match: GLGB_DEBHA (1,4-alpha-glucan-branching enzyme OS=Debaryomyces hansenii GN=GLC3 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.326e-43
Identity = 88/176 (50.00%), Postives = 114/176 (64.77%), Query Frame = 1
Query:    1 GYLNFMGNEFGHPEWIDFPREGNEWSYEKCRRQWNLVDADHLRYKFMNAFDRAMNELDDKFPFLASTKQIVSSTNEEDKVIVFERGDLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFRGDGRV-------GHNIDHFTSPEGIPGVAETNFNNRPNSFRVLSPPRTSVV 507
            GYLNF GNEFGHPEW+DFPR+GN  SY   RRQ+NL++ D LRYKF+ AFD AM  LD K+  L S++  VS  NE DKVIVFER  L+F+FNFHP N+Y  YK+G + PG Y++ L+SD+  F G GR+       G  +  FT+ E         +N+R N+     P RT++V
Sbjct:  536 GYLNFEGNEFGHPEWLDFPRKGNGESYAYARRQFNLIEDDLLRYKFLFAFDGAMQHLDTKYGILLSSQAYVSLKNENDKVIVFERNGLLFIFNFHPTNSYADYKIGVETPGVYQIVLNSDSLSFGGHGRIEETNKETGEKLQFFTNNE--------RWNDRSNALFCYIPSRTAIV 703          
BLAST of CK739641 vs. ExPASy Swiss-Prot
Match: GLGB_MOUSE (1,4-alpha-glucan-branching enzyme OS=Mus musculus GN=Gbe1 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 6.583e-43
Identity = 83/174 (47.70%), Postives = 111/174 (63.79%), Query Frame = 1
Query:    1 GYLNFMGNEFGHPEWIDFPREGNEWSYEKCRRQWNLVDADHLRYKFMNAFDRAMNELDDKFPFLASTKQIVSSTNEEDKVIVFERGDLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFRGDGRVGHNIDHFTSPEGIPGVAETNFNNRPNSFRVLSPPRTSVVYYRVE 522
            GYLNFMGNEFGHPEW+DFPR+GN  SY   RRQ+NL D D LRYKF+N FDR MN L+++  +L++ +  VS  +E +K I FER  L+F+FNFHP  +Y  Y+VG   PGK+++ LDSDA  + G  R+ HN ++F              N RP S  V  P R +++   V+
Sbjct:  534 GYLNFMGNEFGHPEWLDFPRKGNNESYHYARRQFNLTDDDLLRYKFLNNFDRDMNRLEERCGWLSAPQAYVSEKHEANKTITFERAGLLFIFNFHPSKSYTDYRVGTATPGKFKIVLDSDAAEYGGHQRLDHNTNYFAE--------AFEHNGRPYSLLVYIPSRVALILQNVD 699          
BLAST of CK739641 vs. ExPASy Swiss-Prot
Match: GLGB_YARLI (1,4-alpha-glucan-branching enzyme OS=Yarrowia lipolytica GN=GLC3 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.118e-41
Identity = 82/179 (45.81%), Postives = 111/179 (62.01%), Query Frame = 1
Query:    1 GYLNFMGNEFGHPEWIDFPREGNEWSYEKCRRQWNLVDADHLRYKFMNAFDRAMNELDDKFPFLASTKQIVSSTNEEDKVIVFERGDLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFRGDGRVGHNIDH-FTSPEGIPGVAETNFNNRPNSFRVLSPPRTSVVYYRVEEAKK 534
            GYLNF GNEFGHPEW+DFPREGN  S+  CRRQW +VD   LRY+ +N FD AM    D + +L++ +  VS  NE+DKV+V+ER  LVFVFNFHP  ++  Y++G D PG Y + LDSD+  F G GR+ H      T P          +N R N   +  P R ++V+ R ++ ++
Sbjct:  520 GYLNFEGNEFGHPEWLDFPREGNGSSFHYCRRQWPVVDDKLLRYQHLNEFDAAMQHRGDHYGWLSADQAYVSLKNEDDKVVVYERAGLVFVFNFHPNKSFTDYRIGVDQPGTYTLVLDSDSPEFGGFGRIDHEKTRCHTEP--------LEWNGRANCMHIYIPSRVALVFAREDDPRR 690          
BLAST of CK739641 vs. ExPASy Swiss-Prot
Match: GLGB_CRYNE (1,4-alpha-glucan-branching enzyme OS=Cryptococcus neoformans GN=GLC3 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.162e-39
Identity = 84/168 (50.00%), Postives = 108/168 (64.29%), Query Frame = 1
Query:    4 YLNFMGNEFGHPEWIDFPREGNEWSYEKCRRQWNLVDADHLRYKFMNAFDRAMNELDDKFPFLASTKQIVSSTNEEDKVIVFERGDLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFRGDGRVGHNIDHFTSPEGIPGVAETNFNNRPNSFRVLSPPRTSVV 507
            YLNF GNEFGHPEW+DFPREGN  S+   RRQ+NLVD   LRYK++  FD AMN L+DK+ +L S +  VS  +E DK+IVFER  L+F+FNFHP  ++  Y+VG D  G+Y+V L SD   F G  R+     +FT+P          +N R N  +V SP RT +V
Sbjct:  520 YLNFEGNEFGHPEWMDFPREGNGNSFAHARRQFNLVDDKLLRYKYLYEFDVAMNWLEDKYKWLNSPQAYVSLKHEGDKMIVFERAGLLFIFNFHPTQSFTDYRVGVDTAGEYKVILTSDETRFGGHNRIDMGGRYFTTP--------MEWNGRKNWLQVYSPSRTVLV 679          
The following BLAST results are available for this feature:
BLAST of CK739641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
GLGB_ORYSJ4.354e-8780.901,4-alpha-glucan-branching enzyme, chloroplastic/a... [more]
GLGB_SOLTU9.723e-7984.421,4-alpha-glucan-branching enzyme OS=Solanum tuber... [more]
GLGB_MAIZE4.257e-5054.591,4-alpha-glucan-branching enzyme 2, chloroplastic... [more]
GLGB_HORSE3.157e-4549.431,4-alpha-glucan-branching enzyme OS=Equus caballu... [more]
GLGB_HUMAN7.776e-4448.281,4-alpha-glucan-branching enzyme OS=Homo sapiens ... [more]
GLGB_FELCA1.016e-4348.281,4-alpha-glucan-branching enzyme OS=Felis catus G... [more]
GLGB_DEBHA1.326e-4350.001,4-alpha-glucan-branching enzyme OS=Debaryomyces ... [more]
GLGB_MOUSE6.583e-4347.701,4-alpha-glucan-branching enzyme OS=Mus musculus ... [more]
GLGB_YARLI2.118e-4145.811,4-alpha-glucan-branching enzyme OS=Yarrowia lipo... [more]
GLGB_CRYNE1.162e-3950.001,4-alpha-glucan-branching enzyme OS=Cryptococcus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6028 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739641 ID=CK739641; Name=CK739641; organism=Citrus sinensis; type=EST; length=618bp
GGCTACCTTAATTTTATGGGGAATGAGTTTGGTCATCCTGAGTGGATTGA
CTTTCCAAGAGAAGGCAACGAGTGGAGTTATGAAAAATGCAGGCGCCAAT
GGAACTTGGTGGATGCTGATCACTTAAGATATAAGTTCATGAATGCATTT
GACAGAGCTATGAATGAGCTTGATGATAAGTTTCCATTCCTTGCATCGAC
AAAGCAGATTGTGAGCAGTACAAATGAAGAAGATAAGGTTATCGTTTTTG
AGCGTGGAGATCTTGTTTTTGTCTTCAATTTTCATCCAGAAAACACATAT
GAAGGGTATAAAGTTGGGTGCGACTTGCCAGGGAAGTACAGAGTTGCTCT
GGATAGTGATGCTTGGGGATTCCGAGGAGATGGAAGAGTAGGGCATAACA
TAGATCATTTCACATCTCCAGAAGGGATACCAGGAGTTGCAGAAACAAAT
TTCAACAACCGTCCCAACTCATTCAGAGTACTATCGCCACCTCGCACGAG
TGTGGTTTACTATAGAGTAGAAGAAGCCAAGAAGGGCACAACATAAGTGA
GCCAGTGAATGTTCAAGGAAAATTAGCAGCAGATGTTCCCGCTGAGCTGG
AAAGTCCTGAATCATCAG
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