CK739643

Overview
NameCK739643
Unique NameCK739643
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length422
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739643 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 1.359e-52
Identity = 48/63 (76.19%), Postives = 53/63 (84.13%), Query Frame = 3 
Query:  120 KVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRP 308
            K+G   GGR++MRRTVKSAP SIWYGPDRPKYLGPFS+Q PSYLTGEFPGDYGWDT    + P
Sbjct:   26 KIGAVGGGRVSMRRTVKSAPTSIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADP 88

HSP 2 Score: 90.8929 bits (224), Expect = 1.359e-52
Identity = 43/44 (97.73%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:  289 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 420
            AGLSADPETFAKNRELEVIH RWAMLGALGCVFPEILSKNGVKF
Sbjct:   82 AGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKF 125

HSP 3 Score: 44.669 bits (104), Expect = 1.359e-52
Identity = 22/24 (91.67%), Postives = 23/24 (95.83%), Query Frame = 2 
Query:   44 MATSAIQQSAFAGQTALRQSNEFV 115
            MATSAIQQSAFAGQTAL+QSNE V
Sbjct:    1 MATSAIQQSAFAGQTALKQSNELV 24
[Close]
BLAST of CK739643 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.995e-52
Identity = 53/66 (80.30%), Postives = 56/66 (84.85%), Query Frame = 3 
Query:  111 LSRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRP 308
            L RK+G  +GGR TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDT    + P
Sbjct:   23 LVRKIGSFNGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 88

HSP 2 Score: 89.7373 bits (221), Expect = 2.995e-52
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:  289 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 420
            AGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGVKF
Sbjct:   82 AGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKF 125

HSP 3 Score: 40.0466 bits (92), Expect = 2.995e-52
Identity = 19/24 (79.17%), Postives = 21/24 (87.50%), Query Frame = 2 
Query:   44 MATSAIQQSAFAGQTALRQSNEFV 115
            MATSAI+QSAFAGQTAL+  NE V
Sbjct:    1 MATSAIEQSAFAGQTALKSQNELV 24
[Close]
BLAST of CK739643 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.117e-51
Identity = 53/66 (80.30%), Postives = 55/66 (83.33%), Query Frame = 3 
Query:  111 LSRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRP 308
            L RK+G   GGR TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDT    + P
Sbjct:   23 LVRKIGSFGGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 88

HSP 2 Score: 87.4261 bits (215), Expect = 1.117e-51
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:  289 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 420
            AGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGV F
Sbjct:   82 AGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTF 125

HSP 3 Score: 41.2022 bits (95), Expect = 1.117e-51
Identity = 20/24 (83.33%), Postives = 21/24 (87.50%), Query Frame = 2 
Query:   44 MATSAIQQSAFAGQTALRQSNEFV 115
            MATSAIQQSAFAGQTAL+  NE V
Sbjct:    1 MATSAIQQSAFAGQTALKSQNELV 24
[Close]
BLAST of CK739643 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 7.102e-51
Identity = 52/66 (78.79%), Postives = 58/66 (87.88%), Query Frame = 3 
Query:  111 LSRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRP 308
            L RKVG  +GGR++MRRT+KSAP+SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDT    + P
Sbjct:   23 LVRKVG-GNGGRVSMRRTIKSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 87

HSP 2 Score: 88.9669 bits (219), Expect = 7.102e-51
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:  289 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 420
            AGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+KNGVKF
Sbjct:   81 AGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKF 124

HSP 3 Score: 37.3502 bits (85), Expect = 7.102e-51
Identity = 18/24 (75.00%), Postives = 19/24 (79.17%), Query Frame = 2 
Query:   44 MATSAIQQSAFAGQTALRQSNEFV 115
            MATS IQQSAFAGQT L+  NE V
Sbjct:    1 MATSTIQQSAFAGQTLLKPQNELV 24
[Close]
BLAST of CK739643 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.661e-49
Identity = 51/66 (77.27%), Postives = 56/66 (84.85%), Query Frame = 3 
Query:  111 LSRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRP 308
            L RKVGV+DG R +MRRTVK+ PQSIWYG DRPK+LGPFSEQTPSYLTGEFPGDYGWDT    + P
Sbjct:   23 LVRKVGVSDG-RFSMRRTVKAVPQSIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 87

HSP 2 Score: 90.1225 bits (222), Expect = 1.661e-49
Identity = 41/44 (93.18%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:  289 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 420
            AGLSADPETFAKNRELEVIHSRWAMLGALGC+FPE+LSKNGV+F
Sbjct:   81 AGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQF 124

HSP 3 Score: 36.965 bits (84), Expect = 1.661e-49
Identity = 18/24 (75.00%), Postives = 20/24 (83.33%), Query Frame = 2 
Query:   44 MATSAIQQSAFAGQTALRQSNEFV 115
            MA SAIQ SAFAGQTAL+Q +E V
Sbjct:    1 MAASAIQSSAFAGQTALKQRDELV 24
[Close]
BLAST of CK739643 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.160e-49
Identity = 53/64 (82.81%), Postives = 54/64 (84.38%), Query Frame = 3 
Query:  117 RKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRP 308
            RKVG    GRITMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDT    + P
Sbjct:   25 RKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 88

HSP 2 Score: 89.7373 bits (221), Expect = 2.160e-49
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:  289 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 420
            AGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGVKF
Sbjct:   82 AGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKF 125

HSP 3 Score: 33.113 bits (74), Expect = 2.160e-49
Identity = 15/24 (62.50%), Postives = 17/24 (70.83%), Query Frame = 2 
Query:   44 MATSAIQQSAFAGQTALRQSNEFV 115
            MAT AIQQSAF GQ   +  NEF+
Sbjct:    1 MATCAIQQSAFVGQAVGKSQNEFI 24
[Close]
BLAST of CK739643 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.811e-49
Identity = 49/64 (76.56%), Postives = 51/64 (79.69%), Query Frame = 3 
Query:  117 RKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRP 308
            RK G     R TMRRTVKSAP+SIWYGPDRPKYLGPFSEQ PSYLTGEFPGDYGWDT    + P
Sbjct:   25 RKRGNFGQARFTMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADP 88

HSP 2 Score: 87.8113 bits (216), Expect = 2.811e-49
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:  289 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 420
            AGLSADPETFA+NRELEVIHSRWAMLGALGC FPE+L KNGVKF
Sbjct:   82 AGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKF 125

HSP 3 Score: 41.5874 bits (96), Expect = 2.811e-49
Identity = 19/24 (79.17%), Postives = 21/24 (87.50%), Query Frame = 2 
Query:   44 MATSAIQQSAFAGQTALRQSNEFV 115
            MATSAIQQSAF G+T LRQ NEF+
Sbjct:    1 MATSAIQQSAFTGKTGLRQGNEFI 24
[Close]
BLAST of CK739643 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.329e-47
Identity = 55/66 (83.33%), Postives = 58/66 (87.88%), Query Frame = 3 
Query:  111 LSRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRP 308
            L R+VG + GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDT    + P
Sbjct:   22 LVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 86

HSP 2 Score: 91.6633 bits (226), Expect = 4.329e-47
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:  289 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 420
            AGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILSKNGVKF
Sbjct:   80 AGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 123
[Close]
BLAST of CK739643 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.329e-47
Identity = 55/66 (83.33%), Postives = 58/66 (87.88%), Query Frame = 3 
Query:  111 LSRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRP 308
            L R+VG + GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDT    + P
Sbjct:   22 LVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 86

HSP 2 Score: 91.6633 bits (226), Expect = 4.329e-47
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:  289 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 420
            AGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILSKNGVKF
Sbjct:   80 AGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 123
[Close]
BLAST of CK739643 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.041e-44
Identity = 50/59 (84.75%), Postives = 53/59 (89.83%), Query Frame = 3 
Query:  111 LSRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDT 287
            L +KVG A   RITMRRTV+SAP+SIWYGPDRPKYLGPFSE TPSYLTGEFPGDYGWDT
Sbjct:   25 LVKKVGTAQA-RITMRRTVRSAPESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDT 82

HSP 2 Score: 84.3445 bits (207), Expect = 1.041e-44
Identity = 38/44 (86.36%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:  289 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 420
            A +SADPETFAKNRELEVIH RWAMLGALGCVFPE+L+KNG+KF
Sbjct:   83 AAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKF 126

HSP 3 Score: 27.7202 bits (60), Expect = 1.041e-44
Identity = 18/26 (69.23%), Postives = 19/26 (73.08%), Query Frame = 2 
Query:   44 MAT-SAIQQSAFAGQTALR-QSNEFV 115
            MAT SAIQ S+ AGQT LR Q NE V
Sbjct:    1 MATASAIQSSSLAGQTLLRPQQNELV 26
The following BLAST results are available for this feature:
BLAST of CK739643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CB21_GOSHI1.359e-5276.19Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB23_TOBAC2.995e-5280.30Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB26_PETSP1.117e-5180.30Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB21_SILPR7.102e-5178.79Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_LEMGI1.661e-4977.27Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB24_SOLLC2.160e-4982.81Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB215_PEA2.811e-4976.56Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB23_ORYSJ4.329e-4783.33Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI4.329e-4783.33Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PINTH1.041e-4484.75Chlorophyll a-b binding protein type I, chloroplas... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6030 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739643 ID=CK739643; Name=CK739643; organism=Citrus sinensis; type=EST; length=422bp
AGAAGCTTCAGCAACAAAAGGAAAAGCTTTCGCATAAGAACATATGGCAA
CCTCTGCTATCCAACAATCAGCATTTGCTGGCCAGACCGCCTTGAGGCAA
TCCAATGAGTTTGTCCCGCAAGGTTGGAGTTGCTGACGGTGGCCGTATCA
CCATGAGGAGGACTGTCAAATCCGCTCCCCAGAGCATCTGGTACGGCCCA
GACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCATACTT
GACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCCGCTGGTTTATCA
GCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAG
CAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCT
CCAAGAATGGAGTGAAGTTCGG
back to top