CK739650

Overview
NameCK739650
Unique NameCK739650
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739650 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.267e-50
Identity = 91/95 (95.79%), Postives = 94/95 (98.95%), Query Frame = 3 
Query:   99 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRVVSRMFHPNIYADGSICLDILQNQ 383
            MSTPA+KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKL+LQF+EDYPNKPPTVR VSRMFHPNIYADGSICLDILQNQ
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ 95
[Close]
BLAST of CK739650 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.267e-50
Identity = 91/95 (95.79%), Postives = 94/95 (98.95%), Query Frame = 3 
Query:   99 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRVVSRMFHPNIYADGSICLDILQNQ 383
            MSTPA+KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKL+LQF+EDYPNKPPTVR VSRMFHPNIYADGSICLDILQNQ
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ 95
[Close]
BLAST of CK739650 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 2.823e-50
Identity = 91/95 (95.79%), Postives = 92/95 (96.84%), Query Frame = 3 
Query:   99 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRVVSRMFHPNIYADGSICLDILQNQ 383
            MSTPA+KRLMRDFKRLQQDPPAGISGAP DNNI LWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVR VSRMFHPNIYADGSICLDILQNQ
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ 95
[Close]
BLAST of CK739650 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 4.816e-50
Identity = 90/95 (94.74%), Postives = 93/95 (97.89%), Query Frame = 3 
Query:   99 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRVVSRMFHPNIYADGSICLDILQNQ 383
            MSTPA+KRLMRDFKRLQ DPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKL+LQF+EDYPNKPPTVR VSRMFHPNIYADGSICLDILQNQ
Sbjct:    1 MSTPARKRLMRDFKRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ 95
[Close]
BLAST of CK739650 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 8.501e-47
Identity = 85/95 (89.47%), Postives = 89/95 (93.68%), Query Frame = 3 
Query:   99 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRVVSRMFHPNIYADGSICLDILQNQ 383
            M+TPAKKRLM DFKRLQ+DPP GISGAPQDNNIM WNA+IFGP+DTPWDGGTFKLTL FTEDYPNKPP VR VSRMFHPNIYADGSICLDILQNQ
Sbjct:    1 MTTPAKKRLMWDFKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQ 95
[Close]
BLAST of CK739650 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.149e-43
Identity = 76/95 (80.00%), Postives = 91/95 (95.79%), Query Frame = 3 
Query:   99 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRVVSRMFHPNIYADGSICLDILQNQ 383
            MSTPA++RLMRDFKRLQ+DPPAG+SGAP +NNIM+WNAVIFGP+ TP++ GTFKLT++FTE+YPNKPPTVR VS+MFHPN+YADGSICLDILQN+
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNR 95
[Close]
BLAST of CK739650 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 1.149e-43
Identity = 76/95 (80.00%), Postives = 91/95 (95.79%), Query Frame = 3 
Query:   99 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRVVSRMFHPNIYADGSICLDILQNQ 383
            MSTPA++RLMRDFKRLQ+DPPAG+SGAP +NNIM+WNAVIFGP+ TP++ GTFKLT++FTE+YPNKPPTVR VS+MFHPN+YADGSICLDILQN+
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNR 95
[Close]
BLAST of CK739650 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 3.343e-43
Identity = 75/95 (78.95%), Postives = 89/95 (93.68%), Query Frame = 3 
Query:   99 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRVVSRMFHPNIYADGSICLDILQNQ 383
            MSTPA++RLMRDFKRLQ+DPP G+SGAP DNNIM+WNAVIFGP DTP++ GTFKLT++FTE+YPNKPPTVR VS++FHPN+YADG ICLDILQN+
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQNR 95
[Close]
BLAST of CK739650 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.834e-41
Identity = 72/95 (75.79%), Postives = 88/95 (92.63%), Query Frame = 3 
Query:   99 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRVVSRMFHPNIYADGSICLDILQNQ 383
            MSTPA++RLMRDFKRLQ+DPP G+SGAP +NNIM WNAVIFGP+ TP++ GTFKL ++F+E+YPNKPPTVR +S+MFHPN+YADGSICLDILQN+
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNR 95
[Close]
BLAST of CK739650 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.834e-41
Identity = 72/95 (75.79%), Postives = 88/95 (92.63%), Query Frame = 3 
Query:   99 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRVVSRMFHPNIYADGSICLDILQNQ 383
            MSTPA++RLMRDFKRLQ+DPP G+SGAP +NNIM WNAVIFGP+ TP++ GTFKL ++F+E+YPNKPPTVR +S+MFHPN+YADGSICLDILQN+
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNR 95
The following BLAST results are available for this feature:
BLAST of CK739650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
UBC2_ARATH1.267e-5095.79Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBC1_ARATH1.267e-5095.79Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBC2_WHEAT2.823e-5095.79Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC2_MEDSA4.816e-5094.74Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC3_ARATH8.501e-4789.47Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBE2A_MOUSE1.149e-4380.00Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN1.149e-4380.00Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBCD6_DROME3.343e-4378.95Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBE2B_RAT1.834e-4175.79Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT1.834e-4175.79Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6037 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739650 ID=CK739650; Name=CK739650; organism=Citrus sinensis; type=EST; length=388bp
CGCAGATCTCTTCTTTCTCTAGAAGCTTCTTCTCTCATTCTCCCCCCTCC
CCCCCTCTGCAAAAGCCGCTTCTCAGTTTTGCTCTCTAAAACGCCACTAT
GTCAACACCGGCGAAGAAGCGGCTGATGCGGGACTTCAAGCGCCTCCAGC
AAGATCCACCCGCCGGAATCAGCGGGGCCCCTCAAGACAACAACATCATG
TTATGGAACGCCGTTATTTTTGGGCCTGATGATACTCCCTGGGACGGAGG
GACGTTCAAGTTGACTCTTCAGTTTACAGAGGATTATCCGAATAAACCTC
CAACAGTTCGGGTCGTTTCACGGATGTTTCATCCAAATATCTATGCGGAT
GGAAGTATCTGCCTGGATATATTACAAAATCAGGGGAG
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