CK739655

Overview
NameCK739655
Unique NameCK739655
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length436
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3PC_MAGLI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Magnolia liliiflora GN=GAPC PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.790e-59
Identity = 85/111 (76.58%), Postives = 88/111 (79.28%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P    DYMTYMFKYDSVHGQWKHHELKVKD KTLLFGEKPVTVFGVRNPEEIPW ETGAE+VVESTGVFT               VIISAPSKDAPMFVVGVNE+EYK  +
Sbjct:   38 PFITTDYMTYMFKYDSVHGQWKHHELKVKDSKTLLFGEKPVTVFGVRNPEEIPWGETGAEFVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKSNI 148          

HSP 2 Score: 74.3294 bits (181), Expect = 1.790e-59
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 1
Query:    4 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT 117
            K+KIGINGFGRIGRLVARV LQRDDVELVAVNDPFITT
Sbjct:    5 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITT 42          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3PC_ARATH (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 2.540e-58
Identity = 80/111 (72.07%), Postives = 90/111 (81.08%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P    +YMTYMFKYDSVHGQWKH+ELK+KD+KTLLFGEKPVTVFG+RNPE+IPWAE GA+YVVESTGVFT               V+ISAPSKDAPMFVVGVNE+EYK +L
Sbjct:   38 PFITTEYMTYMFKYDSVHGQWKHNELKIKDEKTLLFGEKPVTVFGIRNPEDIPWAEAGADYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDL 148          

HSP 2 Score: 74.7146 bits (182), Expect = 2.540e-58
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 1
Query:    4 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT 117
            K++IGINGFGRIGRLVARV+LQRDDVELVAVNDPFITT
Sbjct:    5 KIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITT 42          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3PC_PETHY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.630e-58
Identity = 83/111 (74.77%), Postives = 87/111 (78.38%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P    +YMTYMFKYDSVHGQWKHHELK KDDKTLLFGEKPVTVFG+RNPEEIPW E GA+YVVESTGVFT               VIISAPSKDAPMFVVGVNE EYK +L
Sbjct:   36 PFISVEYMTYMFKYDSVHGQWKHHELKAKDDKTLLFGEKPVTVFGIRNPEEIPWGEAGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKEYKSDL 146          

HSP 2 Score: 70.8626 bits (172), Expect = 5.630e-58
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1
Query:    4 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT 114
            K+KIGINGFGRIGRLVARV LQRDDVELVAVNDPFI+
Sbjct:    3 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIS 39          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3PC_RANAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ranunculus acris GN=GAPC PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.627e-57
Identity = 80/111 (72.07%), Postives = 86/111 (77.48%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P    DYMTYMFKYD+VHGQWKHHELKVKD+KTLLFGEKPVTVFG RNPEEIPW ETGAE+VVESTGVFT               V+ISAPS DAPMFVVGVN  EYK ++
Sbjct:   37 PFITTDYMTYMFKYDTVHGQWKHHELKVKDEKTLLFGEKPVTVFGCRNPEEIPWGETGAEFVVESTGVFTTKEKASAHLKGGAKKVVISAPSADAPMFVVGVNHTEYKSDI 147          

HSP 2 Score: 74.3294 bits (181), Expect = 1.627e-57
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 1
Query:    1 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT 117
            GK+KIGINGFGRIGRLVARV L RDDVELVAVNDPFITT
Sbjct:    3 GKIKIGINGFGRIGRLVARVALARDDVELVAVNDPFITT 41          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3PC_SINAL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 2.121e-57
Identity = 79/111 (71.17%), Postives = 89/111 (80.18%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P    +YMTYMFKYDSVHGQWKH+ELKVKD+KTLLFGEKPVTVFG+RNPE+IPW E GA++VVESTGVFT               V+ISAPSKDAPMFVVGVNE+EYK +L
Sbjct:   38 PFITTEYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDL 148          

HSP 2 Score: 74.3294 bits (181), Expect = 2.121e-57
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 1
Query:    4 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT 117
            K+KIGINGFGRIGRLVARVILQR+DVELVAVNDPFITT
Sbjct:    5 KIKIGINGFGRIGRLVARVILQRNDVELVAVNDPFITT 42          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.126e-57
Identity = 82/111 (73.87%), Postives = 88/111 (79.28%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P    +YMTYMFKYDSVHGQWKHH++KVKD+KTLLFGEK VTVFG RNPEEIPW  TGA+YVVESTGVFT               VIISAPSKDAPMFVVGVNE+EYKPEL
Sbjct:   36 PFITTEYMTYMFKYDSVHGQWKHHDIKVKDEKTLLFGEKAVTVFGNRNPEEIPWGGTGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPEL 146          

HSP 2 Score: 70.8626 bits (172), Expect = 6.126e-57
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT 117
            +KIGINGFGRIGRLVARVILQR+D ELVAVNDPFITT
Sbjct:    4 IKIGINGFGRIGRLVARVILQREDCELVAVNDPFITT 40          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 2.307e-56
Identity = 80/111 (72.07%), Postives = 85/111 (76.58%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P    DYMTYMFKYDSVHGQWK HE+KVKD  TLLFGEK VTVFG RNPEEIPW ETG EYVVESTGVFT               V+I+APSKDAPMFVVGVNE+EYKP+L
Sbjct:   39 PFISTDYMTYMFKYDSVHGQWKKHEVKVKDSNTLLFGEKAVTVFGCRNPEEIPWGETGVEYVVESTGVFTDKEKAAAHIKGGAKKVVITAPSKDAPMFVVGVNEHEYKPDL 149          

HSP 2 Score: 72.0182 bits (175), Expect = 2.307e-56
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 1
Query:    1 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT 117
            GK+KIGINGFGRIGRLVARV L RDD+ELVAVNDPFI+T
Sbjct:    5 GKIKIGINGFGRIGRLVARVALLRDDIELVAVNDPFIST 43          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.133e-55
Identity = 80/111 (72.07%), Postives = 87/111 (78.38%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P    DYM YMFKYD+VHGQ+KHHELKVKD+KTLLFG+KPV VFG+RNPEEIPWAETGAEYVVESTGVFT               VIISAPSKDAPMFVVGVNE  Y P++
Sbjct:   36 PFITVDYMAYMFKYDTVHGQYKHHELKVKDEKTLLFGDKPVAVFGLRNPEEIPWAETGAEYVVESTGVFTEKEKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKTYTPDI 146          

HSP 2 Score: 70.0922 bits (170), Expect = 1.133e-55
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 1
Query:    4 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT 114
            KVKIGINGFGRIGRLVARV L RDDVELVAVNDPFIT
Sbjct:    3 KVKIGINGFGRIGRLVARVALVRDDVELVAVNDPFIT 39          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3PC_ANTMA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Antirrhinum majus GN=GAPC PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.133e-55
Identity = 82/111 (73.87%), Postives = 85/111 (76.58%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P    DYMTYMFKYDSVHG WKHHELKVKD+KTLLFGEKPV VFG RNPEEIP A TGAEY+VESTGVFT               VIISAPSKDAPMFVVGVNE EYK +L
Sbjct:   36 PFISTDYMTYMFKYDSVHGAWKHHELKVKDEKTLLFGEKPVVVFGRRNPEEIPRASTGAEYIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKEYKSDL 146          

HSP 2 Score: 70.8626 bits (172), Expect = 1.133e-55
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT 117
            +KIGINGFGRIGRLVARV LQRDDVELVAVNDPFI+T
Sbjct:    4 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIST 40          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3PX_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.272e-55
Identity = 75/111 (67.57%), Postives = 86/111 (77.48%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P    +YMTYMFKYD+VHG WKH ++K+KDDKTLLFGEKPVTVFGVRNPEEIPW E GA+YVVESTGVFT               V+ISAPSKDAPMFVVGVNE++Y  ++
Sbjct:   36 PFITTEYMTYMFKYDTVHGHWKHSDIKLKDDKTLLFGEKPVTVFGVRNPEEIPWGEAGADYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEDKYTSDV 146          

HSP 2 Score: 74.3294 bits (181), Expect = 3.272e-55
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 1
Query:    1 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT 117
            GK+KIGINGFGRIGRLVARV LQ DDVELVAVNDPFITT
Sbjct:    2 GKIKIGINGFGRIGRLVARVALQSDDVELVAVNDPFITT 40          
The following BLAST results are available for this feature:
BLAST of CK739655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
G3PC_MAGLI1.790e-5976.58Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ARATH2.540e-5872.07Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETHY5.630e-5874.77Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_RANAC1.627e-5772.07Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_SINAL2.121e-5771.17Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_DIACA6.126e-5773.87Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_GINBI2.307e-5672.07Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_CRAPL1.133e-5572.07Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ANTMA1.133e-5573.87Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PX_HORVU3.272e-5567.57Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6042 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739655 ID=CK739655; Name=CK739655; organism=Citrus sinensis; type=EST; length=436bp
GGGAAGGTCAAGATCGGAATCAACGGATTCGGAAGAATTGGTAGGCTGGT
GGCAAGAGTCATCTTGCAGAGGGACGATGTTGAACTCGTTGCTGTTAATG
ATCCCTTTATCACAACCCGATTACATGACATACATGTTTAAGTACGACAG
TGTTCACGGTCAATGGAAGCACCATGAATTGAAGGTTAAGGACGATAAGA
CCCTTCTCTTTGGTGAGAAGCCTGTCACTGTTTTCGGTGTTAGGAACCCA
GAGGAGATCCCATGGGCTGAGACTGGAGCCGAGTATGTTGTGGAGTCGAC
TGGAGTCTTTACTGACAAGGATAAGGCTGCTGCCCATTTGAAGGGTGGTG
CTAAGAAAGTTATCATCTCAGCCCCCAGCAAGGATGCTCCTATGTTTGTT
GTCGGTGTCAATGAAAACGAGTACAAACCAGAGCTC
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