CK739661

Overview
NameCK739661
Unique NameCK739661
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length270
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739661 vs. ExPASy Swiss-Prot
Match: PLAS1_POPNI (Plastocyanin A, chloroplastic OS=Populus nigra GN=PETE PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.544e-16
Identity = 44/79 (55.70%), Postives = 52/79 (65.82%), Query Frame = 1
Query:    4 VGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAWVP 240
            V ++ K SAS +P+LSIKA++KDVG                  I+VLLG DDGSLAFVPS FS+S GEKIVFKNNA  P
Sbjct:   27 VSASAKVSASPLPRLSIKASMKDVGAAVVATAASAMIASNAMAIDVLLGADDGSLAFVPSEFSISPGEKIVFKNNAGFP 105          
BLAST of CK739661 vs. ExPASy Swiss-Prot
Match: PLAS_SPIOL (Plastocyanin, chloroplastic OS=Spinacia oleracea GN=PETE PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.707e-15
Identity = 38/72 (52.78%), Postives = 48/72 (66.67%), Query Frame = 1
Query:   25 SASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAWVP 240
            + +AVP+LS+KA+LK+VG                  +EVLLGG DGSLAF+P  FSV+SGE+IVFKNNA  P
Sbjct:   34 TTTAVPRLSVKASLKNVGAAVVATAAAGLLAGNAMAVEVLLGGGDGSLAFLPGDFSVASGEEIVFKNNAGFP 105          

HSP 2 Score: 28.4906 bits (62), Expect = 1.707e-15
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = 2
Query:  233 GFPHNVVFHEDE 268
            GFPHNVVF EDE
Sbjct:  103 GFPHNVVFDEDE 114          
BLAST of CK739661 vs. ExPASy Swiss-Prot
Match: PLAS2_POPNI (Plastocyanin B, chloroplastic OS=Populus nigra GN=PETE PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.727e-15
Identity = 43/79 (54.43%), Postives = 52/79 (65.82%), Query Frame = 1
Query:    4 VGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAWVP 240
            V ++ K SAS +P+LSIKA+LK+VG                  ++VLLG DDGSLAFVPS FSV +GEKIVFKNNA  P
Sbjct:   27 VSASAKVSASPLPRLSIKASLKEVGAAVVATAASAMIASNAMAVDVLLGADDGSLAFVPSEFSVPAGEKIVFKNNAGFP 105          
BLAST of CK739661 vs. ExPASy Swiss-Prot
Match: PLAS_SOLLC (Plastocyanin, chloroplastic OS=Solanum lycopersicum GN=PETE PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.024e-15
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 1
Query:    7 GSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAWVP 240
            G++ K +A+ V +L++KA+LKDVG                  +EVLLGGDDGSLAF+P +FSVS+GEKI FKNNA  P
Sbjct:   30 GASAKVAAAPVARLTVKASLKDVGAVVAATAVSAMLASNAMALEVLLGGDDGSLAFIPGNFSVSAGEKITFKNNAGFP 107          
BLAST of CK739661 vs. ExPASy Swiss-Prot
Match: PLAS1_ARATH (Plastocyanin minor isoform, chloroplastic OS=Arabidopsis thaliana GN=PETE PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.141e-13
Identity = 41/80 (51.25%), Postives = 49/80 (61.25%), Query Frame = 1
Query:   10 STMKASASAV---PKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAWVP 240
            ST+  S SA    PKL++K++LKD G                  +EVLLG DDGSLAFVPS F+V+ GEKIVFKNNA  P
Sbjct:   29 STISRSTSATRAPPKLALKSSLKDFGVIAVATAASIVLAGNAMAMEVLLGSDDGSLAFVPSEFTVAKGEKIVFKNNAGFP 108          
BLAST of CK739661 vs. ExPASy Swiss-Prot
Match: PLAS_PEA (Plastocyanin, chloroplastic OS=Pisum sativum GN=PETE PE=4 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 7.049e-13
Identity = 35/72 (48.61%), Postives = 41/72 (56.94%), Query Frame = 1
Query:   25 SASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAWVP 240
            S S  P+L ++A+LKD G                  +EVLLG  DG LAFVPSS  VS+GE IVFKNNA  P
Sbjct:   34 STSQSPRLCVRASLKDFGVALVATAASAVLASNALAVEVLLGASDGGLAFVPSSLEVSAGETIVFKNNAGFP 105          

HSP 2 Score: 28.4906 bits (62), Expect = 7.049e-13
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = 2
Query:  233 GFPHNVVFHEDE 268
            GFPHNVVF EDE
Sbjct:  103 GFPHNVVFDEDE 114          
BLAST of CK739661 vs. ExPASy Swiss-Prot
Match: PLAS2_ARATH (Plastocyanin major isoform, chloroplastic OS=Arabidopsis thaliana GN=DRT112 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.368e-12
Identity = 40/85 (47.06%), Postives = 52/85 (61.18%), Query Frame = 1
Query:   10 STMKASAS--------AVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAWVP 240
            ST+K+SA+        A PKL++K++LK+ G                  IEVLLGG DGSLAF+P+ FS++ GEKIVFKNNA  P
Sbjct:   20 STIKSSATVRIQTAAVASPKLTVKSSLKNFGVAAVAAAASIALAGNAMAIEVLLGGGDGSLAFIPNDFSIAKGEKIVFKNNAGYP 104          
BLAST of CK739661 vs. ExPASy Swiss-Prot
Match: PLAS_SILPR (Plastocyanin, chloroplastic OS=Silene pratensis GN=PETE PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.790e-12
Identity = 37/71 (52.11%), Postives = 42/71 (59.15%), Query Frame = 1
Query:   28 ASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAWVP 240
            A A P++SIKA+LKDVG                   EVLLG  DG LAFVPS  S++SGEKI FKNNA  P
Sbjct:   32 AVATPRMSIKASLKDVGVVVAATAAAGILAGNAMAAEVLLGSSDGGLAFVPSDLSIASGEKITFKNNAGFP 102          
The following BLAST results are available for this feature:
BLAST of CK739661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PLAS1_POPNI4.544e-1655.70Plastocyanin A, chloroplastic OS=Populus nigra GN=... [more]
PLAS_SPIOL1.707e-1552.78Plastocyanin, chloroplastic OS=Spinacia oleracea G... [more]
PLAS2_POPNI1.727e-1554.43Plastocyanin B, chloroplastic OS=Populus nigra GN=... [more]
PLAS_SOLLC5.024e-1551.28Plastocyanin, chloroplastic OS=Solanum lycopersicu... [more]
PLAS1_ARATH6.141e-1351.25Plastocyanin minor isoform, chloroplastic OS=Arabi... [more]
PLAS_PEA7.049e-1348.61Plastocyanin, chloroplastic OS=Pisum sativum GN=PE... [more]
PLAS2_ARATH1.368e-1247.06Plastocyanin major isoform, chloroplastic OS=Arabi... [more]
PLAS_SILPR6.790e-1252.11Plastocyanin, chloroplastic OS=Silene pratensis GN... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6048 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739661 ID=CK739661; Name=CK739661; organism=Citrus sinensis; type=EST; length=270bp
GTTGTTGGTTCCACCATGAAGGCCTCAGCCTCTGCTGTCCCAAAGCTCAG
CATCAAGGCCACACTCAAAGATGTTGGAGTGGCCGTTGCGGCCACAGCTG
CCAGCGCAATGCTTGCTAGCAATGCCATGGCCATTGAGGTTTTGCTTGGT
GGTGATGATGGGTCCTTGGCTTTTGTTCCAAGCTCTTTCTCTGTCAGCTC
CGGTGAAAAGATTGTGTTCAAGAACAATGCCTGGGTTCCCACACAACGTT
GTTTTCCATGAAGATGAGAT
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